Gene omics information

Query gene ID At5g51500
Gene name pectinesterase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOS.X.H.G.
0.7486.1At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POS.X.H.G.
0.6781.6At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PS.X.H.G.
0.6176.7At2g24400816976auxin-responsive protein, putative / small auxin up RNA (SAUR_D)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POS.X.H.G.
0.5974.7At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PS.X.H.G.
0.5773.8At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVS.X.H.G.
0.5673.0At3g59850825155polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVS.X.H.G.
0.5673.0At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5469.5At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBS.X.H.G.
0.5368.6At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
311.6100.0GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
309.9100.0GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
267.4100.0GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
231.2100.0GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
159.799.9GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
148.999.9GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
140.399.9GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
126.999.9GSM133979Birnbaum_1-9_StageII-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
124.299.9GSM133981Birnbaum_1-11_StageII-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
105.199.9GSM133980Birnbaum_1-10_StageII-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8501051At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMC.G.S.X.
0.059e-1065At2g45220819130pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOMC.G.S.X.
0.042e-757At1g02810838078pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.029e-756At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.031e-552At5g20860832209pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.021e-552At1g53830841820ATPME2encodes a pectin methylesteraseC.G.S.X.
0.042e-448At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMC.G.S.X.
0.058e-446At3g47400823894pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMAC.G.S.X.
0.043e-344At4g00190828218pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFOAMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxPsAffx.C19000035_atPsAffx.C19000035--2e+0At1g7775030S ribosomal protein S13, chloroplast, putativeC.G.S.X.
0.026e+032Hordeum vulgareContig15812_atContig15812--1e+0At5g19730pectinesterase family proteinC.G.S.X.
0.042e+036Oryza sativaOs01g0312500AK105998.1-Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment)2e-2At3g14310ATPME3C.G.S.X.
0.045e-344Populus trichocarpaPtp.7635.1.S1_atDN484289hypothetical protein-1e-14At1g02810pectinesterase family proteinC.G.S.X.
0.038e-136Triticum aestivumTa.5588.1.A1_atBJ249930--9e-3At3g06830pectinesterase family proteinC.G.S.X.
0.032e-550Vitis vinifera1615574_atCB977067hypothetical protein LOC100245304-7e-9At2g45220pectinesterase family proteinC.G.S.X.
0.015e+032Zea maysZm.3425.1.S1_atBF728112hypothetical protein LOC100278025-4e+0At5g67620unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00422Link to KaPPA-View 4Carbohydrate esterases
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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