Gene omics information

Query gene ID At5g51490
Gene name pectinesterase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMS.X.H.G.
0.8894.0At1g25410839127ATIPT6AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cdsS.X.H.G.
0.8693.1At1g18100838390E12A11E12A11 protein (E12A11)S.X.H.G.
0.8592.4At4g25980828704cationic peroxidase, putativeF:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOMS.X.H.G.
0.8290.9At5g44360834462FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMS.X.H.G.
0.7788.0At1g65880842900BZO1 (BENZOYLOXYGLUCOSINOLATE 1)Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.S.X.H.G.
0.7788.0At2g25940817135ALPHA-VPE (alpha-vacuolar processing enzyme)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.S.X.H.G.
0.7687.4At5g07500830642PEI1Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.S.X.H.G.
0.7486.1At3g04200819575germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOS.X.H.G.
0.7284.8At1g73290843663scpl5 (serine carboxypeptidase-like 5)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
484.4100.0E-ATMX-1-raw-cel-1112746154
450.8100.0E-ATMX-1-raw-cel-1112746095
350.7100.0GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
336.4100.0GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
309.6100.0GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
279.2100.0GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
276.6100.0E-ATMX-1-raw-cel-1112746209
273.8100.0GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
265.5100.0GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
138.899.9E-ATMX-1-raw-cel-1112746267
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8501051At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.035e-859At5g20860832209pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.033e-654At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMC.G.S.X.
0.033e-344At1g53830841820ATPME2encodes a pectin methylesteraseC.G.S.X.
0.021e-242At4g02300827708pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.051e-242At3g47400823894pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMAC.G.S.X.
0.015e-240At3g05610819727pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;OBPFMVAC.G.S.X.
0.035e-240At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMC.G.S.X.
0.022e-138At1g76600843993unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e+036Glycine maxGmaAffx.11502.1.S1_atAW119616--2e-15At1g53840ATPME1C.G.S.X.
0.016e+032Hordeum vulgareHVSMEl0014N23f_atHVSMEl0014N23f--2e+1At5g51090unknown proteinC.G.S.X.
0.021e-140Oryza sativaOs09g0471000AK103634.1-RmlC-like cupin family protein3e-1At3g49430SRp34a (Ser/Arg-rich protein 34a)C.G.S.X.
0.063e-138Populus trichocarpaPtpAffx.94750.1.A1_atCV273451hypothetical protein-9e-2At5g51490pectinesterase family proteinC.G.S.X.
0.045e-240Triticum aestivumTa.5588.1.A1_atBJ249930--9e-3At3g06830pectinesterase family proteinC.G.S.X.
0.022e-136Vitis vinifera1616522_atCF403905hypothetical protein LOC100262892-2e-8At3g14310ATPME3C.G.S.X.
0.015e+032Zea maysZm.3472.1.S1_atAI783224--4e+0At2g37510RNA-binding protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00422Link to KaPPA-View 4Carbohydrate esterases
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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