CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g51340

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g51340 835208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB S.X. H.G.
0.86 93.1 At1g33980 840295 Smg-4/UPF3 family protein Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) S.X. H.G.
0.78 88.6 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA S.X. H.G.
0.71 84.2 At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.64 78.9 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. S.X. H.G.
0.50 65.3 At5g06120 830499 Ran-binding protein, putative F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP S.X. H.G.
0.44 57.2 At1g80930 844433 MIF4G domain-containing protein / MA3 domain-containing protein F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVA S.X. H.G.
0.43 55.3 At1g55325 841978 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF S.X. H.G.
0.35 41.6 At3g05090 819671 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.3 99.6 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
23.8 99.6 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
21.7 99.6 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.8 99.5 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
16.6 99.5 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
14.8 99.4 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.7 99.4 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.6 99.4 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.2 99.4 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
13.1 99.4 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 42 At2g03480 814877 dehydration-responsive protein-related F:unknown;P:unknown;C:mitochondrion;PBOAF C.G. S.X.
0.01 3e-1 38 At5g14370 831288 - F:unknown;P:unknown;C:chloroplast;POMFB C.G. S.X.
0.00 3e-1 38 At1g58250 842193 SAB (SABRE) SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots. C.G. S.X.
0.01 1e+0 36 At5g18950 832013 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.01 1e+0 36 At5g63770 836497 ATDGK2 (Diacylglycerol kinase 2) a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold. C.G. S.X.
0.01 1e+0 36 At3g24200 822006 FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen F:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-3 44 Glycine max GmaAffx.14834.1.S1_at AW350241 - - 1e-3 At5g51340 unknown protein C.G. S.X.
0.04 9e-3 42 Hordeum vulgare Contig9426_at Contig9426 - - 2e-2 At5g51340 unknown protein C.G. S.X.
0.01 5e-1 38 Oryza sativa Os.52967.1.S1_at - - - 0 C.G. S.X.
0.22 1e-10 69 Populus trichocarpa PtpAffx.157124.1.S1_at CK106225 hypothetical protein - 3e-11 At5g51340 unknown protein C.G. S.X.
0.05 5e-3 44 Triticum aestivum TaAffx.121673.1.S1_at CA728231 - - 2e-3 At5g51340 unknown protein C.G. S.X.
0.01 2e-2 40 Vitis vinifera 1608307_at CF209143 hypothetical protein LOC100247674 - 2e-1 At2g33300 - C.G. S.X.
0.01 7e+0 32 Zea mays ZmAffx.1487.1.S1_at 11990232-44 - - 8e-13 Atcg00660 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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