CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g51310

Gene name gibberellin 20-oxidase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g51310 835205 gibberellin 20-oxidase-related F:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFM S.X. H.G.
0.91 95.6 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV S.X. H.G.
0.91 95.6 At4g15300 827196 CYP702A2 a member of the cytochrome P450 gene family. molecular function unknown. S.X. H.G.
0.91 95.6 At2g23410 816873 ACPT (Arabidopsis cis-prenyltransferase) encodes cis-prenyltransferase S.X. H.G.
0.91 95.6 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA S.X. H.G.
0.90 95.1 At1g47600 841169 BGLU34 (BETA GLUCOSIDASE 34) Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change. S.X. H.G.
0.89 94.6 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase S.X. H.G.
0.89 94.6 At2g32610 817821 ATCSLB01 encodes a gene similar to cellulose synthase S.X. H.G.
0.89 94.6 At5g15940 831451 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.89 94.6 At5g16230 831483 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
406.1 100.0 GSM184484 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
342.8 100.0 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
219.4 100.0 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
218.1 100.0 GSM184478 Lateral Root Cap root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
140.6 99.9 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
127.3 99.9 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
112.7 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
102.5 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
89.9 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
89.4 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 3e-2 40 At4g23340 828433 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFM C.G. S.X.
0.02 3e-2 40 At2g38240 818403 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:response to salt stress;C:unknown;POBFM C.G. S.X.
0.02 1e-1 38 At5g46700 834713 TRN2 (TORNADO 2) Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. C.G. S.X.
0.02 5e-1 36 At4g16780 827384 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin. C.G. S.X.
0.02 5e-1 36 At3g62340 825407 WRKY68 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.01 5e-1 36 At1g50890 841511 binding F:binding;P:biological_process unknown;C:unknown;PFO C.G. S.X.
0.03 2e+0 34 At4g34600 829612 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P C.G. S.X.
0.01 2e+0 34 At4g11400 826744 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein F:DNA binding;P:unknown;C:vacuole;PMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-2 40 Glycine max GmaAffx.91372.1.S1_at CF807097 - - 3e-4 At3g19010 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 1e+0 34 Hordeum vulgare HV_CEa0018I05f_at HV_CEa0018I05f - - 2e+1 At5g65420 CYCD4 C.G. S.X.
0.03 1e+0 36 Oryza sativa OsAffx.29444.1.S1_at - - - 0 C.G. S.X.
0.06 3e-3 44 Populus trichocarpa PtpAffx.211538.1.S1_at pmrna22614 - - 1e-3 At4g23340 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.3564.2.S1_at CA695960 - - 7e-2 At5g51310 gibberellin 20-oxidase-related C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1616975_at CF205728.1 - - 1e+0 At5g51845 - C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.842.1.A1_at AI770597 - - 3e+0 At3g15900 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009686 The chemical reactions and pathways resulting in the formation of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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