CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g51170

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At5g51170 835191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.44 57.2 At5g03560 831789 nucleobase:cation symporter F:nucleobase:cation symporter activity;P:biological_process unknown;C:cellular_component unknown;BMFPO S.X. H.G.
0.13 5.8 At3g62880 825463 ATOEP16-4 Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. S.X. H.G.
0.08 2.3 At3g45770 823720 oxidoreductase, zinc-binding dehydrogenase family protein F:zinc ion binding, ATP binding;P:oxidation reduction, metabolic process;C:mitochondrion, chloroplast, nucleus;BOFMPA S.X. H.G.
0.04 0.9 At1g17530 838327 ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) Encodes a translocase of inner mitochondrial membrane. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.8 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
33.3 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.4 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.3 99.7 GSM142651 MC002_ATH1_A10.2-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
27.3 99.7 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
26.5 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.2 99.7 GSM142655 MC002_ATH1_A11.3-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.9 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.9 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.7 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At2g18300 816346 basic helix-loop-helix (bHLH) family protein F:transcription factor activity;P:response to cytokinin stimulus, regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.01 4e-1 36 At4g29950 829118 microtubule-associated protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPBV C.G. S.X.
0.02 4e-1 36 At4g30470 829170 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMA C.G. S.X.
0.04 2e+0 34 At5g60615 3771542 - Encodes a defensin-like (DEFL) family protein. C.G. S.X.
0.01 2e+0 34 At5g03190 831909 CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47) F:molecular_function unknown;P:biological_process unknown;C:unknown;POB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-2 40 Glycine max Gma.4499.1.A1_at BI967549 - - 2e-2 At5g51170 unknown protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare HY03L11u_at HY03L11u - - 9e-1 At2g28820 - C.G. S.X.
0.02 8e-1 36 Oryza sativa Os12g0609300 9640.m04072 - - 4e-1 At5g02020 unknown protein C.G. S.X.
0.17 3e-9 63 Populus trichocarpa PtpAffx.4416.1.S1_at CV260854 hypothetical protein - 3e-9 At5g51170 unknown protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.17033.1.S1_at CA616890 - - 3e+0 At5g60945 - C.G. S.X.
0.03 2e-3 42 Vitis vinifera 1621339_at CF514970 hypothetical protein LOC100253988 - 4e-4 At1g53090 SPA4 (SPA1-RELATED 4) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.8548.1.A1_at BM339575 hypothetical protein LOC100279117 - 2e+0 At2g36680 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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