CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g51060

Gene name RHD2 (ROOT HAIR DEFECTIVE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At5g51060 835179 RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. S.X. H.G.
0.40 50.8 At3g01190 821314 peroxidase 27 (PER27) (P27) (PRXR7) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.33 38.1 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.33 38.1 At5g39970 833994 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF S.X. H.G.
0.25 22.6 At2g27000 817242 CYP705A8 member of CYP705A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
161.5 99.9 E-MEXP-546-raw-cel-863289532
153.5 99.9 E-MEXP-546-raw-cel-863289476
88.7 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
80.3 99.9 E-MEXP-546-raw-cel-863289424
62.3 99.8 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
53.1 99.8 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
49.4 99.8 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
49.1 99.8 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
48.7 99.8 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
46.3 99.8 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 6e-40 167 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA C.G. S.X.
0.17 3e-17 91 At5g47910 834842 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. C.G. S.X.
0.26 2e-15 85 At5g07390 830630 ATRBOHA (respiratory burst oxidase homolog A) F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBA C.G. S.X.
0.04 2e-11 71 At5g60010 836123 FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase F:in 8 functions;P:oxidation reduction;C:integral to membrane, membrane;MPFOB C.G. S.X.
0.14 2e-9 65 At1g64060 842710 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. C.G. S.X.
0.07 4e-7 57 At1g09090 837430 ATRBOHB (respiratory burst oxidase homolog B) F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBA C.G. S.X.
0.08 4e-4 48 At1g19230 838506 respiratory burst oxidase protein E (RbohE) / NADPH oxidase F:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOA C.G. S.X.
0.04 6e-3 44 At4g11230 826725 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-3 44 Glycine max Gma.6821.1.S1_at BI967216 - - 1e-3 At5g51060 RHD2 (ROOT HAIR DEFECTIVE 2) C.G. S.X.
0.07 2e-7 57 Hordeum vulgare Contig7197_at Contig7197 - - 5e-15 At3g45810 ferric reductase-like transmembrane component family protein C.G. S.X.
0.06 2e-7 59 Oryza sativa Os01g0734200 AK103747.1 - RbohAOsp (Fragment) 2e-31 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) C.G. S.X.
0.19 1e-26 123 Populus trichocarpa PtpAffx.203374.1.S1_at pmrna6714 hypothetical protein - 3e-29 At5g47910 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) C.G. S.X.
0.05 6e-6 54 Triticum aestivum Ta.5620.1.S1_x_at CD888222 - - 2e-6 At1g09090 ATRBOHB (respiratory burst oxidase homolog B) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1621839_at CD715518 - - 5e+0 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
0.09 2e-13 77 Zea mays Zm.4309.1.S1_at AW052961 respiratory burst oxidase protein B - 1e-25 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0033198 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus.
X GO:0010053 The process whereby a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast.
X GO:0009060 The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
S GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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