CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g50850

Gene name MAB1 (MACCI-BOU)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At5g50850 835157 MAB1 (MACCI-BOU) F:pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity;P:defense response to bacterium;C:mitochondrion, nucleolus, plasma membrane;BOMPFA S.X. H.G.
0.67 81.6 At1g16700 838239 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative F:NADH dehydrogenase (ubiquinone) activity, metal ion binding;P:unknown;C:mitochondrion, respiratory chain complex I;BOAPMF S.X. H.G.
0.46 59.8 At2g33040 817866 ATP synthase gamma chain, mitochondrial (ATPC) F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA S.X. H.G.
0.44 57.2 At5g67590 836895 FRO1 (FROSTBITE1) Mutant leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase, EC 1.6.5.3) in the mitochondrial electron transfer chain. S.X. H.G.
0.29 30.3 At5g52840 835361 NADH-ubiquinone oxidoreductase-related F:oxidoreductase activity, acting on NADH or NADPH;P:photorespiration;C:mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.7 99.5 GSM184931 Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
12.7 99.3 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
12.2 99.3 GSM184925 Arabidopsis, whole roots, standard conditions, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
11.2 99.2 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
10.7 99.2 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
10.4 99.2 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.2 99.2 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.0 99.2 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
10.0 99.2 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.8 99.1 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At3g25130 822104 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFBPVA C.G. S.X.
0.04 1e-1 38 At1g30120 839891 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit. C.G. S.X.
0.01 5e-1 36 At1g68470 843176 exostosin family protein F:catalytic activity;P:biological_process unknown;C:membrane;POM C.G. S.X.
0.01 2e+0 34 At5g49960 835060 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:unknown;BPOAM C.G. S.X.
0.01 2e+0 34 At3g49490 824111 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;OMFBP C.G. S.X.
0.01 2e+0 34 At3g51850 824348 CPK13 member of Calcium Dependent Protein Kinase C.G. S.X.
0.02 2e+0 34 At2g34590 818024 transketolase family protein F:pyruvate dehydrogenase (acetyl-transferring) activity, transketolase activity;P:pollen tube development;C:chloroplast, chloroplast envelope;BOMPFA C.G. S.X.
0.01 2e+0 34 At1g64760 842784 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 9e-53 208 Glycine max Gma.11089.1.S1_at AI855657 - - 7e-53 At5g50850 MAB1 (MACCI-BOU) C.G. S.X.
0.55 3e-47 188 Hordeum vulgare Contig3299_s_at Contig3299 - - 8e-47 At5g50850 MAB1 (MACCI-BOU) C.G. S.X.
0.44 1e-43 178 Oryza sativa Os08g0536000 AK071782.1 - Pyruvate dehydrogenase E1 beta subunit isoform 1(EC 1.2.4.1) 9e-44 At5g50850 MAB1 (MACCI-BOU) C.G. S.X.
0.50 2e-72 274 Populus trichocarpa PtpAffx.450.1.S1_at CK318302 hypothetical protein - 2e-72 At5g50850 MAB1 (MACCI-BOU) C.G. S.X.
0.36 5e-29 129 Triticum aestivum Ta.4804.1.S1_x_at CK201081 - - 7e-29 At5g50850 MAB1 (MACCI-BOU) C.G. S.X.
0.26 1e-23 109 Vitis vinifera 1609000_at CF203971.1 hypothetical protein LOC100264409 - 4e-23 At5g50850 MAB1 (MACCI-BOU) C.G. S.X.
0.38 8e-29 127 Zea mays Zm.435.1.S1_at AF069910.1 pyruvate dehydrogenase E1 beta subunit isoform 3 - 3e-28 At5g50850 MAB1 (MACCI-BOU) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00120 Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00010 Glycolysis / Gluconeogenesis
00020 Citrate cycle (TCA cycle)
00290 Valine, leucine and isoleucine biosynthesis
00620 Pyruvate metabolism
00650 Butanoate metabolism
01061 Biosynthesis of phenylpropanoids
01062 Biosynthesis of terpenoids and steroids
01063 Biosynthesis of alkaloids derived from shikimate pathway
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01065 Biosynthesis of alkaloids derived from histidine and purine
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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