Gene omics information

Query gene ID At5g50770
Gene name AtHSD6 (hydroxysteroid dehydrogenase 6)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g50770835149AtHSD6 (hydroxysteroid dehydrogenase 6)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.8693.1At2g23190816851CYP81D7member of CYP81DS.X.H.G.
0.5065.3At3g12203820399scpl17 (serine carboxypeptidase-like 17)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBS.X.H.G.
0.4659.8At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.S.X.H.G.
0.4253.9At5g49190834978SUS2 (SUCROSE SYNTHASE 2)Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
812.9100.0GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
736.1100.0GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
144.999.9GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
126.599.9GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
115.999.9GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
111.599.9GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
103.999.9GSM311287Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
102.799.9GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
100.299.9GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
89.999.9GSM311288Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.073e-240At3g47360823890AtHSD3 (hydroxysteroid dehydrogenase 3)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVC.G.S.X.
0.011e-138At5g62580836379bindingF:binding;P:biological_process unknown;C:cellular_component unknown;POBMC.G.S.X.
0.031e-138At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVC.G.S.X.
0.015e-136At5g17830831651unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
0.025e-136At3g0484081964440S ribosomal protein S3A (RPS3aA)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast;MOAPFBC.G.S.X.
0.015e-136At1g76720844006GTP binding / GTPase/ translation initiation factorF:GTP binding, GTPase activity, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.032e+034At5g152655008213unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.012e+034At5g23770832442RNA bindingF:RNA binding;P:unknown;C:unknown;POBFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGmaAffx.36887.1.S1_atBI972689--1e-2At1g22985AP2 domain-containing transcription factor, putativeC.G.S.X.
0.042e-136Hordeum vulgareContig4786_atContig4786--4e-5At5g50690AtHSD7 (hydroxysteroid dehydrogenase 7)C.G.S.X.
0.031e+036Oryza sativaOs05g01788669633.m00759--7e-1At1g53610unknown proteinC.G.S.X.
0.041e-552Populus trichocarpaPtpAffx.213305.1.S1_atpmrna26024hypothetical protein-7e-3At5g50700short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.045e-136Triticum aestivumTa.5721.1.S1_atCD911583--3e-3At5g50690AtHSD7 (hydroxysteroid dehydrogenase 7)C.G.S.X.
0.056e-444Vitis vinifera1614429_atBQ792837--1e+0At1g79100arginine/serine-rich protein-relatedC.G.S.X.
0.023e+032Zea maysZm.11731.1.A1_atBM380291helix-loop-helix DNA-binding domain containing protein-5e-9At4g09180basic helix-loop-helix (bHLH) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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