Gene omics information

Query gene ID At5g50530
Gene name CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At5g50530835121CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinF:unknown;P:unknown;C:chloroplast;BOAPFMS.X.H.G.
0.4862.5At1g34780840382ATAPRL4 (APR-like 4)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.S.X.H.G.
0.3846.7At5g36250833622protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:nucleus;PMOFVBS.X.H.G.
0.2930.3At1g27700839663protein bindingF:protein binding;P:Golgi vesicle transport, vesicle-mediated transport;C:nucleus;PMS.X.H.G.
0.2726.2At3g18295821358unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.2217.5At5g03370831859acylphosphatase familyF:acylphosphatase activity;P:biological_process unknown;C:unknown;BOMAPFS.X.H.G.
0.2115.8At2g20830816615folic acid binding / transferaseF:folic acid binding, transferase activity;P:metabolic process;C:cellular_component unknown;OBMPAS.X.H.G.
0.1912.7At3g03720821176CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.S.X.H.G.
0.1811.4At1g55520841999TBP2 (TATA BINDING PROTEIN 2)TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.S.X.H.G.
0.1811.4At3g26000822197F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
80.899.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
80.799.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
53.699.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
46.699.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.699.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.599.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
29.399.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
29.399.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
28.799.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
28.499.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9903059At5g50640835133CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinF:unknown;P:unknown;C:chloroplast;BOAPFMC.G.S.X.
0.332e-44180At5g63490836468CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinF:unknown;P:unknown;C:unknown;BOAPFMC.G.S.X.
0.107e-2099At3g52950824461CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinF:unknown;P:unknown;C:chloroplast;BOAPFMC.G.S.X.
0.113e-654At2g36500818225CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinF:unknown;P:unknown;C:unknown;BOAPFMC.G.S.X.
0.021e-242At2g47580819371U1A (SPLICEOSOMAL PROTEIN U1A)encodes spliceosomal protein U1AC.G.S.X.
0.012e-138At1g71890843520SUC5Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.C.G.S.X.
0.028e-136At5g01430831915Got1-like family proteinF:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOPC.G.S.X.
0.018e-136At4g29600829081cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPAFC.G.S.X.
0.018e-136At4g00090828179transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:endomembrane system;MBFOPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.105e-1273Glycine maxGmaAffx.58743.1.S1_atBI321215--1e-12At5g50530CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinC.G.S.X.
0.024e-136Hordeum vulgareHW05L10u_atHW05L10u--4e+0At2g16210transcriptional factor B3 family proteinC.G.S.X.
0.075e-1377Oryza sativaOs01g0923300AK067520.1-CBS domain containing protein2e-8At5g63490CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinC.G.S.X.
0.409e-51202Populus trichocarpaPtpAffx.210659.1.S1_atpmrna20904hypothetical protein-6e-54At5g63490CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinC.G.S.X.
0.084e-344Triticum aestivumTa.25620.1.S1_x_atCD930381--3e-3At5g50530CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinC.G.S.X.
0.022e-136Vitis vinifera1615286_atCB834390--3e-1At5g50530CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinC.G.S.X.
0.021e+034Zea maysZm.17976.1.A1_atCK827611hypothetical protein LOC100277421-1e+0At3g61220short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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