Gene omics information

Query gene ID At5g50520
Gene name nodulin family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9296.0At5g50520835120nodulin family proteinF:unknown;P:unknown;C:endomembrane system;BOPFMAS.X.H.G.
0.5065.3At1g63900842693zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBS.X.H.G.
0.4355.3At1g05940837104CAT9 (CATIONIC AMINO ACID TRANSPORTER 9)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.S.X.H.G.
0.4355.3At1g17120838282CAT8 (CATIONIC AMINO ACID TRANSPORTER 8)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.S.X.H.G.
0.4050.8At1g47310841134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.3948.4At5g01980831911zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVBS.X.H.G.
0.3846.7At4g16330827327oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:peroxisome;POBFMS.X.H.G.
0.3846.7At4g03080828097kelch repeat-containing serine/threonine phosphoesterase family proteinF:hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, iron ion binding, phosphoprotein phosphatase activity;P:unknown;C:plasma membrane;MOPFBAVS.X.H.G.
0.3745.0At3g10210820183-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOS.X.H.G.
0.3541.6At4g03560825655ATTPC1 (TWO-PORE CHANNEL 1)Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. Patch clamp analysis of loss of function mutation indicates TPC1 does not affect Ca2+ signaling in response to abiotic and biotic stress.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.599.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
19.799.6GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.499.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
17.499.5GSM128675Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
16.599.5GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
15.499.5GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
15.099.4GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
13.299.4GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.199.4GSM128650Underwood_1-3_Cor-10e6-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.899.3GSM128648Underwood_1-1_Cor-10e6-24h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
1.0003217At5g50630835132nodulin family proteinF:unknown;P:unknown;C:endomembrane system;BOPFMAC.G.S.X.
0.015e-240At3g47040823857glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAMC.G.S.X.
0.012e-138At2g05120815060-F:unknown;P:unknown;C:chloroplast;MPOC.G.S.X.
0.018e-136At5g24100832475leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.018e-136At4g18380827567F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.018e-136At1g76390843971armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:plasma membrane;PMFOBVC.G.S.X.
0.013e+034At5g14120831262nodulin family proteinF:unknown;P:unknown;C:plasma membrane, vacuole;BOPFMAC.G.S.X.
0.013e+034At5g42010834206WD-40 repeat family proteinF:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-138Glycine maxGma.10654.1.S1_atBQ299410--2e-1At5g50520nodulin family proteinC.G.S.X.
0.024e-136Hordeum vulgareContig15627_s_atContig15627--4e+0At5g15802unknown proteinC.G.S.X.
0.022e-346Oryza sativaOs04g0388700AK106974.1-Nodulin-like domain containing protein9e-4At3g01930nodulin family proteinC.G.S.X.
0.024e+034Populus trichocarpaPtpAffx.80309.1.A1_atDN492975--1e+0At4g02250invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.023e+034Triticum aestivumTa.27978.1.S1_atCD923669--2e-1At2g02880mucin-relatedC.G.S.X.
0.024e+032Vitis vinifera1622733_atBQ793487--2e+0At5g58060YKT61C.G.S.X.
0.011e+034Zea maysZm.1957.1.A1_atAY112028.1COP9 signalosome complex subunit 8-3e-1At5g37070unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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