CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g50460

Gene name protein transport protein SEC61 gamma subunit, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At5g50460 835114 protein transport protein SEC61 gamma subunit, putative F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport, protein targeting;C:membrane;MFOPA S.X. H.G.
0.67 81.6 At2g02510 814780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PF S.X. H.G.
0.67 81.6 At2g44620 819070 MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1) Encodes a member of the mitochondrial acyl carrier protein (ACP) family. As part of the mitochondrial matrix, it is likely to be involved in fatty acid or lipoic acid biogenesis. Its acylated form is predominantly present in the mitochondrial membrane while the non-acylated form is soluble. S.X. H.G.
0.67 81.6 At4g37830 829939 cytochrome c oxidase-related F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPO S.X. H.G.
0.66 80.1 At3g08610 820008 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P S.X. H.G.
0.61 76.7 At4g00860 826213 ATOZI1 putative pathogenesis-related protein whose transcript level is induced in response to ozone and pathogenic Pseudomonas strains. S.X. H.G.
0.59 74.7 At2g47380 819351 cytochrome c oxidase subunit Vc family protein / COX5C family protein F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;P S.X. H.G.
0.58 73.8 At3g47833 823938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.57 73.8 At4g32470 829382 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane;MPFO S.X. H.G.
0.56 73.0 At4g22310 828326 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.3 99.5 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
15.7 99.5 GSM226534 L4SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.5 99.4 GSM226535 L5SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.2 99.0 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
7.9 98.9 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
7.7 98.9 GSM142835 MG001_ATH1_A13-Torres-4N1 GSE6176 Impact of Type III effectors on plant defense responses
7.7 98.9 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
7.6 98.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
7.5 98.8 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
7.5 98.8 GSM142833 MG001_ATH1_A10-Torres-5N1 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.90 8e-64 242 At4g24920 828594 protein transport protein SEC61 gamma subunit, putative F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport, protein targeting;C:membrane;MFOPA C.G. S.X.
0.80 2e-39 161 At3g48570 824017 protein transport protein SEC61 gamma subunit, putative F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein targeting, protein transport;C:plasma membrane;MFOP C.G. S.X.
0.01 4e-1 34 At5g56010 835699 HSP81-3 a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. C.G. S.X.
0.01 2e+0 32 At5g10370 830901 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related F:in 6 functions;P:unknown;C:intracellular, chloroplast;MBOFPVA C.G. S.X.
0.03 2e+0 32 At4g30640 829187 F-box family protein (FBL19) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MPFOB C.G. S.X.
0.04 2e+0 32 At1g73000 843631 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.02 2e+0 32 At1g07250 837236 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF C.G. S.X.
0.02 6e+0 30 At5g18280 831946 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination. C.G. S.X.
0.03 6e+0 30 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 3e-24 111 Glycine max Gma.14349.1.S1_a_at BU084145 - - 9e-29 At4g24920 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.33 1e-17 87 Hordeum vulgare Contig3681_x_at Contig3681 - - 1e-15 At4g24920 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.40 1e-21 103 Oryza sativa Os06g0653900 BI797949 - SEC61 complex gamma subunit family protein 4e-1 At5g07440 GDH2 (GLUTAMATE DEHYDROGENASE 2) C.G. S.X.
0.40 3e-21 101 Populus trichocarpa PtpAffx.5370.1.S1_at CF232895 hypothetical protein - 6e-24 At3g48570 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.27 8e-15 79 Triticum aestivum Ta.1747.3.S1_x_at CK209938 - - 4e-19 At4g24920 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.37 3e-30 129 Vitis vinifera 1612315_at CB347014 hypothetical protein LOC100256046 - 3e-29 At5g50460 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.28 1e-20 97 Zea mays Zm.5925.1.A1_at BM269383 hypothetical protein LOC100192024 - 1e-19 At5g50460 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006605 The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
C GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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