Gene omics information

Query gene ID At5g50420
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g50420835110unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOS.X.H.G.
0.5773.8At3g49720824134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane;PS.X.H.G.
0.5469.5At4g17890827512AGD8 (ARF-GAP DOMAIN 8)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.S.X.H.G.
0.5368.6At1g75680843902AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plasma membrane;PBMOFS.X.H.G.
0.5267.4At4g14360827079dehydration-responsive protein-relatedF:unknown;P:N-terminal protein myristoylation;C:Golgi apparatus;PBOS.X.H.G.
0.5065.3At5g42320834237metallocarboxypeptidase/ zinc ion bindingF:metallocarboxypeptidase activity, zinc ion binding;P:proteolysis;C:membrane;MBOFPAS.X.H.G.
0.4963.5At1g10670837610ACLA-1One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.S.X.H.G.
0.4761.2At3g25140822105QUA1 (QUASIMODO 1)Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant shows cell adhesion defect and lower wall uronic acid content.S.X.H.G.
0.4761.2At5g14790831331bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.4761.2At2g41770818776unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.899.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.999.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
28.099.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
27.499.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
24.499.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.299.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.599.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
23.599.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.499.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.399.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.663e-142506At1g17270838298unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.241e-30135At1g53770841814unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMOC.G.S.X.
0.018e-136At3g53320824500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVC.G.S.X.
0.018e-136At2g15630816056pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.018e-136At2g48160819428-F:unknown;P:unknown;C:unknown;MFBOPAVC.G.S.X.
0.018e-136At1g20220838610nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:plant-type cell wall;MBOPFVAC.G.S.X.
0.023e+034At4g17500827464ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.C.G.S.X.
0.013e+034At4g03430827925EMB2770 (EMBRYO DEFECTIVE 2770)Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.C.G.S.X.
0.013e+034At4g37490829904CYCB1Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.048e-240Glycine maxGma.1078.1.A1_atAI442774protein-O-fucosyltransferase 2-2e-8At1g17270unknown proteinC.G.S.X.
0.012e+034Hordeum vulgareHVSMEg0005I18r2_atHVSMEg0005I18r2--4e+0At5g56300GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)C.G.S.X.
0.074e-448Oryza sativaOs07g0572600AK109147.1-Inorganic pyrophosphatase family protein7e-14At1g53770unknown proteinC.G.S.X.
0.078e-859Populus trichocarpaPtpAffx.28224.5.S1_a_atCV260294hypothetical protein-3e-8At5g50420unknown proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.118838.1.S1_atBJ305812--3e-1At5g67560ATARLA1D (ADP-ribosylation factor-like A1D)C.G.S.X.
0.024e+032Vitis vinifera1608076_atCB342524--4e-1At2g36100integral membrane family proteinC.G.S.X.
0.016e+032Zea maysZm.4616.2.A1_atCF637845Hypothetical protein LOC100193318-9e-1At3g25980mitotic spindle checkpoint protein, putative (MAD2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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