Gene omics information

Query gene ID At5g50390
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At5g50390835107pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFS.X.H.G.
0.135.8At5g54850835575unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMS.X.H.G.
0.114.1At1g53345841770unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;BOPAVMS.X.H.G.
0.103.4At1g76270843960unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PFS.X.H.G.
0.082.3At1g12770837833EMB1586 (embryo defective 1586)F:helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity;P:embryonic development ending in seed dormancy;C:unknown;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
230.3100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
220.9100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
217.6100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
210.3100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
196.2100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
191.5100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
183.4100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
173.1100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
169.4100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
152.599.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-552At5g19020832021pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFC.G.S.X.
0.033e-448At1g47580841167lipoyltransferase, putativeF:lipoyltransferase activity, catalytic activity;P:protein modification process;C:cellular_component unknown;OBPFMAC.G.S.X.
0.011e-346At4g37380829892pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.014e-344At3g49170824078EMB2261 (embryo defective 2261)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBC.G.S.X.
0.024e-344At1g52640841696pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.024e-344At1g09220837442pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cytosolic ribosome;POMFC.G.S.X.
0.022e-242At3g22690821840pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:regulation of chlorophyll biosynthetic process, photosystem II assembly, photosystem I assembly, thylakoid membrane organization, RNA modification;C:chloroplast;POMFBAC.G.S.X.
0.012e-242At3g23660821946transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOPC.G.S.X.
0.012e-242At2g35030818067pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.026e+034Glycine maxHgAffx.8878.1.S1_atCB379623--1e+0At5g46710zinc-binding family proteinC.G.S.X.
0.011e-138Hordeum vulgareContig18049_atContig18049--5e-4At4g21065-C.G.S.X.
0.028e-344Oryza sativaOs03g0583000BQ908809-Hypothetical protein4e+0At2g22420peroxidase 17 (PER17) (P17)C.G.S.X.
0.033e-552Populus trichocarpaPtpAffx.202921.1.S1_atpmrna5783hypothetical protein-9e-15At2g15690pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.021e+036Triticum aestivumTaAffx.112286.1.S1_atCA625248--4e-3At5g48580FKBP15-2C.G.S.X.
0.035e-342Vitis vinifera1620095_atCF403669hypothetical protein LOC100260539-2e-5At2g15690pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.011e-138Zea maysZm.12541.1.S1_atAI438689--2e-1At5g50990-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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