CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g50360

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g50360 835103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.86 93.1 At1g52690 841701 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVA S.X. H.G.
0.73 85.5 At2g47770 819389 benzodiazepine receptor-related F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAF S.X. H.G.
0.57 73.8 At5g06760 830565 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFV S.X. H.G.
0.57 73.8 At5g66400 836772 RAB18 (RESPONSIVE TO ABA 18) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
295.0 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
291.2 100.0 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
234.1 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
220.7 100.0 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
188.1 100.0 GSM131300 AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
167.5 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
158.1 99.9 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
151.0 99.9 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
147.2 99.9 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
119.8 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 1e-19 97 At5g63350 836455 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PM C.G. S.X.
0.09 5e-19 95 At3g48510 824010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.06 1e-4 48 At5g40800 834080 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 3e-2 40 At5g40790 834079 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e-2 40 At3g27250 822344 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e-1 36 At3g10690 820238 DNA gyrase subunit A family protein F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA C.G. S.X.
0.02 4e-1 36 At2g18500 816365 OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7) F:unknown;P:biological_process unknown;C:plasma membrane;PFO C.G. S.X.
0.04 4e-1 36 At1g48598 6241053 CPuORF31 (Conserved peptide upstream open reading frame 31) Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF31 represents a conserved upstream opening reading frame relative to major ORF AT1G48600.1 C.G. S.X.
0.01 4e-1 36 At1g49890 841412 unknown protein F:unknown;P:unknown;C:chloroplast;OMFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.10204.1.S1_at BQ298213 - - 9e-6 At5g63350 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare HM04D17r_at HM04D17r - - 1e+0 At4g05553 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os06g0156800 9634.m00554 - - 2e+0 At5g55570 unknown protein C.G. S.X.
0.07 4e-8 59 Populus trichocarpa PtpAffx.201020.1.S1_at pmrna1999 hypothetical protein - 3e-2 At3g27250 unknown protein C.G. S.X.
0.04 2e-3 44 Triticum aestivum TaAffx.28760.1.S1_at CA656452 - - 1e-3 At5g50360 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1622084_at CF513595 hypothetical protein LOC100256435 - 1e+0 At5g51451 unknown protein C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.963.1.A1_at AI833792 - - 8e-1 At4g04620 ATG8B (autophagy 8b) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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