Gene omics information

Query gene ID At5g50340
Gene name ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g50340835101ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide bindingF:damaged DNA binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:DNA repair;C:cellular_component unknown;BOAPMVS.X.H.G.
0.4355.3At3g51850824348CPK13member of Calcium Dependent Protein KinaseS.X.H.G.
0.3846.7At2g46060819214transmembrane protein-relatedF:molecular_function unknown;P:biological_process unknown;C:membrane;MPOS.X.H.G.
0.3643.6At1g07705837284transcription regulatorF:transcription regulator activity;P:regulation of transcription;C:nucleus, chloroplast;MOBFPVS.X.H.G.
0.3541.6At2g27980817342protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOBS.X.H.G.
0.3439.8At2g29190817468APUM2 (Arabidopsis Pumilio 2)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPBS.X.H.G.
0.3338.1At5g37380833712DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAVS.X.H.G.
0.3338.1At5g60940836215transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAS.X.H.G.
0.3338.1At3g30300822730-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.3338.1At3g02710821269nuclear associated protein-related / NAP-relatedEncodes a protein with a putative role in mRNA splicing.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
51.299.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.899.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.999.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.399.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.099.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
34.199.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.999.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
30.699.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.399.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At3g49660824128transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:G-protein coupled receptor protein signaling pathway;C:chloroplast, heterotrimeric G-protein complex;MFOPBAVC.G.S.X.
0.012e-138At4g019852745601unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAC.G.S.X.
0.022e-138At4g29020829023glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAC.G.S.X.
0.002e-138At3g48190823975ATM (ATAXIA-TELANGIECTASIA MUTATED)encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.C.G.S.X.
0.012e-138At2g019053768365CYCJ18 (CYCLIN J18)cyclin J18 (cycJ18)C.G.S.X.
0.019e-136At5g64270836548splicing factor, putativeF:binding;P:mRNA processing;C:chloroplast;MFOBPAVC.G.S.X.
0.019e-136At5g01470831788unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPBOAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.081e-1275Glycine maxGmaAffx.80641.1.S1_atBE020209--3e-13At5g50340ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide bindingC.G.S.X.
0.021e-138Hordeum vulgareContig19320_atContig19320--9e-1At1g06475unknown proteinC.G.S.X.
0.071e-759Oryza sativaOs06g0151600AB111516.1-Peptidase S16, lon protease family protein8e-8At5g50340ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide bindingC.G.S.X.
0.192e-1895Populus trichocarpaPtpAffx.136052.1.A1_atCK091110hypothetical protein-6e-19At5g50340ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide bindingC.G.S.X.
0.141e-1275Triticum aestivumTa.6171.1.S1_atBJ298673--5e-13At5g50340ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide bindingC.G.S.X.
0.011e+034Vitis vinifera1610865_atCF371986hypothetical protein LOC100261908-4e+0At2g20670unknown proteinC.G.S.X.
0.022e-344Zea maysZm.10397.1.A1_atBQ163620--3e-1At1g07300josephin protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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