Gene omics information

Query gene ID At5g50210
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g50210835086QS (QUINOLINATE SYNTHASE)Encodes an Fe-S binding protein with quinolinate synthase (QS) activity and cysteine desulfurase activator activity. The QS activity was demonstrated by functional complementation of corresponding E. coli mutants and complementation of embryo-lethal phenotypes of the QS homozygous null allele in Arabidopsis. The SufE domain of the protein also stimulates the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. This protein binds a (4Fe-Su)2+ cluster in its NadA domain and is localized in the chloroplast.S.X.H.G.
0.5267.4At5g64300836551ATGCHencodes GTP cyclohydrolase II that can functionally complement E. coli mutant deficient in this gene. It also has 3,4-dihydroxy-2-butanone-4-phosphate synthase activity which makes it a bifunctional enzyme involved in the formation of the pyrimidine and of the carbohydrate from GTP and ribulose-5-phosphate, respectivelyS.X.H.G.
0.4457.2At4g23850828484long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetaseF:catalytic activity;P:fatty acid biosynthetic process;C:plasma membrane;BOMFPAVS.X.H.G.
0.4355.3At1g25390839125protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.4355.3At4g14220827062RHF1A (RING-H2 GROUP F1A)encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. RHF1a can interact with the cell cycle inhibitor ICK4/KRP6 in vitro. It apppears to target ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF1a is expressed in the carpels throughout floral development. It is expressed in various tissues of the anthers during the early stages of anther development but not in stage 12 flowers and beyond.S.X.H.G.
0.4253.9At5g22770832340alpha-ADR (alpha-adaptin)F:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane, membrane;MOFPS.X.H.G.
0.4152.4At2g11520815625CRCK3high overall homology to CRCK1S.X.H.G.
0.4152.4At1g14000837960VIK (VH1-INTERACTING KINASE)Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.S.X.H.G.
0.4152.4At5g60410836163SIZ1Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.S.X.H.G.
0.4050.8At5g54110835498ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane. It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
41.499.8GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responses
39.299.8GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responses
24.899.6GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responses
24.099.6GSM128686Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
23.399.6GSM142830GM001_ATH1_A14-Torres-4N3_repeat2GSE6176Impact of Type III effectors on plant defense responses
22.899.6GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-344At5g52200835296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPVC.G.S.X.
0.017e-240At5g41740834177disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAC.G.S.X.
0.017e-240At5g24500832521unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFC.G.S.X.
0.017e-240At5g22830832346ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)putative Mg(2+) transport proteinC.G.S.X.
0.017e-240At4g14480827095protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.017e-240At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)C.G.S.X.
0.017e-240At4g17940827519bindingF:binding;P:biological_process unknown;C:unknown;PBOMAC.G.S.X.
0.017e-240At3g09570820114-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;MPOFBC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.208e-21103Glycine maxGma.16702.2.S1_atBU082274--2e-21At5g50210QS (QUINOLINATE SYNTHASE)C.G.S.X.
0.166e-1065Hordeum vulgareContig9018_atContig9018--1e-9At5g50210QS (QUINOLINATE SYNTHASE)C.G.S.X.
0.054e-1481Oryza sativaOs12g0290200AK112053.1--1e-14At5g50210QS (QUINOLINATE SYNTHASE)C.G.S.X.
0.327e-86319Populus trichocarpaPtpAffx.212816.1.S1_s_atpmrna25084hypothetical protein-5e-86At5g50210QS (QUINOLINATE SYNTHASE)C.G.S.X.
0.162e-552Triticum aestivumTaAffx.100035.1.S1_atCA699573--9e-6At5g50210QS (QUINOLINATE SYNTHASE)C.G.S.X.
0.015e-342Vitis vinifera1609571_atBQ795107hypothetical protein LOC100258119-6e-12At4g36860zinc ion bindingC.G.S.X.
0.021e-138Zea maysZm.9973.1.A1_atBM350441--2e+0At5g08080SYP132 (SYNTAXIN OF PLANTS 132)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0051176Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur.
XGO:0009060The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
XGO:0051347Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.
XGO:0009435The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH.
SGO:0016226The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00760Link to KEGG PATHWAYNicotinate and nicotinamide metabolism
01064Link to KEGG PATHWAYBiosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01100Link to KEGG PATHWAYMetabolic pathways
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