CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g50200

Gene name WR3 (WOUND-RESPONSIVE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At5g50200 835085 WR3 (WOUND-RESPONSIVE 3) Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction. S.X. H.G.
0.60 75.7 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.46 59.8 At1g08090 837327 ATNRT2:1 (NITRATE TRANSPORTER 2:1) High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. S.X. H.G.
0.25 22.6 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. S.X. H.G.
0.20 14.4 At1g33840 840280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
94.6 99.9 E-MEXP-828-raw-cel-1156922750
91.1 99.9 E-MEXP-828-raw-cel-1156922968
90.5 99.9 E-MEXP-828-raw-cel-1156922794
81.5 99.9 E-MEXP-828-raw-cel-1156922772
79.6 99.9 E-MEXP-828-raw-cel-1156922467
78.6 99.9 E-MEXP-828-raw-cel-1156922829
76.5 99.9 E-MEXP-828-raw-cel-1156922731
67.1 99.8 E-MEXP-828-raw-cel-1156922872
64.2 99.8 E-MEXP-828-raw-cel-1156922923
58.8 99.8 E-MEXP-828-raw-cel-1156922533
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 2e-11 69 At4g24730 828575 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBMO C.G. S.X.
0.01 3e-1 36 At5g22900 832354 ATCHX3 member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 3e-1 36 At1g51820 841609 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 1e+0 34 At5g66240 836756 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA C.G. S.X.
0.01 1e+0 34 At5g62230 836344 ERL1 (ERECTA-LIKE 1) Encodes a receptor-like kinase that, together with ER and ERL2 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. Along with erl2 functionally compensates for loss of erecta during integument development. C.G. S.X.
0.01 1e+0 34 At5g10540 830919 peptidase M3 family protein / thimet oligopeptidase family protein F:metalloendopeptidase activity;P:response to cadmium ion, proteolysis;C:cytosol, apoplast, chloroplast;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max PsAffx.CL584Contig1_s_at PsAffx.CL584Contig1 - - 4e+0 At4g36500 unknown protein C.G. S.X.
0.09 4e-2 38 Hordeum vulgare Contig4952_x_at Contig4952 - - 1e-1 At5g50200 WR3 (WOUND-RESPONSIVE 3) C.G. S.X.
0.04 1e+1 32 Oryza sativa OsAffx.6441.1.S1_at - - - 0 C.G. S.X.
0.10 2e-3 44 Populus trichocarpa PtpAffx.7819.1.S1_at CV273112 hypothetical protein - 2e-3 At5g50200 WR3 (WOUND-RESPONSIVE 3) C.G. S.X.
0.11 8e-2 38 Triticum aestivum Ta.28353.1.S1_at BQ752795 Nar2.2 protein - 7e-2 At5g50200 WR3 (WOUND-RESPONSIVE 3) C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1614895_at CD799483 hypothetical protein LOC100253502 - 3e-16 At1g16430 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.1344.1.S1_at 40794996-152 - - 9e+0 Atmg00550 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
X GO:0015706 The directed movement of nitrate into, out of, within or between cells.
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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