Gene omics information

Query gene ID At5g49980
Gene name AFB5 (Auxin F-Box protein 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g49980835062AFB5 (Auxin F-Box protein 5)F:ubiquitin-protein ligase activity;P:unknown;C:unknown;PMOFS.X.H.G.
0.4050.8At1g79970844337-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.2930.3At3g14100820626oligouridylate-binding protein, putativeF:mRNA 3'-UTR binding;P:unknown;C:unknown;MPFOBS.X.H.G.
0.1811.4At3g26935822311zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPS.X.H.G.
0.146.8At5g01020831918protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.199.4GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.799.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.599.1GSM142639MC002_ATH1_A6.2-dubos-5kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.999.0GSM318625Apex_octa_18DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
8.699.0GSM318622Apex_mir-319b_17DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
8.399.0GSM142634MC002_ATH1_A4.3-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.198.9GSM142633MC002_ATH1_A4.2-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
7.798.9GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
7.498.8GSM142640MC002_ATH1_A6.3-dubos-5kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
7.398.8GSM131659ATGE_28_B2GSE5633AtGenExpress: Developmental series (shoots and stems)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.650975At4g24390828541F-box family protein (FBX14)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMOFC.G.S.X.
0.034e-344At3g26810822296AFB2 (AUXIN SIGNALING F-BOX 2)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:plasma membrane;PMOFBC.G.S.X.
0.022e-138At1g12820837838AFB3 (AUXIN SIGNALING F-BOX 3)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOBC.G.S.X.
0.019e-136At5g57130835819protein bindingF:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAMC.G.S.X.
0.019e-136At4g36190829776serine-type peptidaseF:serine-type peptidase activity;P:proteolysis;C:vacuole;MOFPBC.G.S.X.
0.019e-136At4g17895827513UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20)Encodes a ubiquitin-specific protease.C.G.S.X.
0.019e-136At4g14920827150DNA binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOC.G.S.X.
0.019e-136At3g12820820464AtMYB10 (myb domain protein 10)Member of the R2R3 factor gene family.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.136e-654Glycine maxGmaAffx.63041.1.S1_atBI786222--2e-6At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.068e-961Hordeum vulgareContig10247_atContig10247--2e-8At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.057e-344Oryza sativaOs03g0187500AK059536.1-Leucine-rich repeat, cysteine-containing subtypecontaining protein5e-3At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.244e-22107Populus trichocarpaPtp.1728.1.S1_atAF139835.1f-box family protein-5e-22At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.021e+036Triticum aestivumTa.4576.1.S1_atBJ268168--7e+0At1g49230zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.027e-238Vitis vinifera1615500_atCB973087hypothetical protein LOC100254771-3e-12At2g39940COI1 (CORONATINE INSENSITIVE 1)C.G.S.X.
0.052e-654Zea maysZm.5990.1.S1_a_atAY111300.1--2e-6At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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