Gene omics information

Query gene ID At5g49970
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5673.0At5g49970835061ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)encodes the bifunctional pyridoxine (pyridoxamine) 5-phosphate oxidase (PPOX)(EC that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)S.X.H.G.
0.3338.1At5g03430831843phosphoadenosine phosphosulfate (PAPS) reductase family proteinF:transferase activity;P:Mo-molybdopterin cofactor biosynthetic process, metabolic process;C:cellular_component unknown;BOMFAPS.X.H.G.
0.2930.3At2g03390814868uvrB/uvrC motif-containing proteinF:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;OBMFPS.X.H.G.
0.2930.3At5g51020835175CRL (CRUMPLED LEAF)Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.S.X.H.G.
0.2319.3At2g23390816871-F:molecular_function unknown;P:biological_process unknown;C:unknown;OBPS.X.H.G.
0.2014.4At5g50920835165CLPC1Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.799.5GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
15.599.5GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
12.799.3GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
7.998.9GSM7717804h low CO2 + light replicate BGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expression
6.898.7GSM237294Shoot Selenate rep1GSE9311Gene expression in roots and shoots of plants grown on selenate
6.698.7GSM47028dcl2-1 18GSE2473Small RNA biogenesis mutants
6.498.6GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-138At5g05210830403nucleolar matrix protein-relatedF:unknown;P:unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.012e-138At4g23320828431protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAC.G.S.X.
0.022e-138At2g04620815004cation efflux family proteinF:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;OBMFPAVC.G.S.X.
0.018e-136At4g199252745717disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:membrane;PC.G.S.X.
0.028e-136At3g03190821227ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).C.G.S.X.
0.018e-136At2g21730816710CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVC.G.S.X.
0.018e-136At2g28620817411kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.293e-1687Glycine maxGmaAffx.85964.1.S1_atBF423556--3e-14At5g49970ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)C.G.S.X.
0.022e-344Hordeum vulgareContig10082_atContig10082--2e+0At5g24650mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinC.G.S.X.
0.086e-344Oryza sativaOs10g0377800AK099380.1-Pyridoxamine 5'-phosphate oxidase (EC (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)C.G.S.X.
0.139e-23109Populus trichocarpaPtpAffx.53701.1.S1_atCK097560hypothetical protein-3e-23At5g49970ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)C.G.S.X.
0.079e-756Triticum aestivumTa.2423.1.S1_atBT009467.1Calcium-dependent protein kinase-3e-23At3g20410CPK9 (calmodulin-domain protein kinase 9)C.G.S.X.
0.029e-134Vitis vinifera1611981_atCF403805--6e-2At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinC.G.S.X.
0.056e-342Zea maysZm.16775.1.A1_atCF638158hypothetical protein LOC100274644-7e-3At5g49970ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0042817The chemical reactions and pathways involving 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.
CGO:0008615The chemical reactions and pathways resulting in the formation of pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00036Link to KaPPA-View 4Pyridoxal 5'-phosphate biosynthesis and salvage pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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