Gene omics information

Query gene ID At5g49960
Gene name binding / catalytic
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g49960835060binding / catalyticF:binding, catalytic activity;P:metabolic process;C:unknown;BPOAMS.X.H.G.
0.3338.1At5g11800831053KEA6member of Putative potassium proton antiporter familyS.X.H.G.
0.2014.4At5g49950835059embryogenesis-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPS.X.H.G.
0.1710.2At2g40280818620dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;PBFMOAS.X.H.G.
0.103.4At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPS.X.H.G.
0.030.6At5g28850833004calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
35.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
33.299.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
33.099.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
28.099.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-138At4g22260828321IM (IMMUTANS)Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.C.G.S.X.
0.013e-138At3g14350820655SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cytosol, nucleus, plasma membrane;MPOBFVAC.G.S.X.
0.011e+036At2g273152745564unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PC.G.S.X.
0.011e+036At2g46510819262ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.C.G.S.X.
0.011e+036At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMC.G.S.X.
0.011e+036At1g26330839175DNA bindingF:DNA binding;P:biological_process unknown;C:nucleus;OMPBFC.G.S.X.
0.011e+036At1g61040842395VIP5 (vernalization independence 5)Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family.C.G.S.X.
0.015e+034Atmg01200--hypothetical proteinC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-138Glycine maxGmaAffx.91352.1.S1_x_atCF807077--2e-4At1g15860-C.G.S.X.
0.016e-136Hordeum vulgareContig13392_atContig13392--5e+0At4g32915-C.G.S.X.
0.272e-59232Oryza sativaOs01g0870100AK067564.1-DMI1 protein1e-63At5g49960binding / catalyticC.G.S.X.
0.157e-654Populus trichocarpaPtpAffx.212441.1.S1_atpmrna24377hypothetical protein-4e-6At5g49960binding / catalyticC.G.S.X.
0.011e+036Triticum aestivumTa.1862.3.S1_atCA644887--8e-14At1g53400unknown proteinC.G.S.X.
0.011e+034Vitis vinifera1614428_atBQ799174hypothetical protein LOC100266723-4e-135At4g23100GSH1 (GLUTAMATE-CYSTEINE LIGASE)C.G.S.X.
0.011e-138Zea maysZmAffx.1038.1.A1_atAI881773--3e+0At5g5729060S acidic ribosomal protein P3 (RPP3B)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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