CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49960

Gene name binding / catalytic

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g49960 835060 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:unknown;BPOAM S.X. H.G.
0.33 38.1 At5g11800 831053 KEA6 member of Putative potassium proton antiporter family S.X. H.G.
0.20 14.4 At5g49950 835059 embryogenesis-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFP S.X. H.G.
0.17 10.2 At2g40280 818620 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:Golgi apparatus;PBFMOA S.X. H.G.
0.10 3.4 At4g24840 828587 - F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP S.X. H.G.
0.03 0.6 At5g28850 833004 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.0 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.9 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.1 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.2 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.1 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.0 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.9 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.1 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.0 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.2 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 38 At4g22260 828321 IM (IMMUTANS) Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues. C.G. S.X.
0.01 3e-1 38 At3g14350 820655 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cytosol, nucleus, plasma membrane;MPOBFVA C.G. S.X.
0.01 1e+0 36 At2g27315 2745564 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P C.G. S.X.
0.01 1e+0 36 At2g46510 819262 ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR) Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive. C.G. S.X.
0.01 1e+0 36 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM C.G. S.X.
0.01 1e+0 36 At1g26330 839175 DNA binding F:DNA binding;P:biological_process unknown;C:nucleus;OMPBF C.G. S.X.
0.01 1e+0 36 At1g61040 842395 VIP5 (vernalization independence 5) Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family. C.G. S.X.
0.01 5e+0 34 Atmg01200 - - hypothetical protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Glycine max GmaAffx.91352.1.S1_x_at CF807077 - - 2e-4 At1g15860 - C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig13392_at Contig13392 - - 5e+0 At4g32915 - C.G. S.X.
0.27 2e-59 232 Oryza sativa Os01g0870100 AK067564.1 - DMI1 protein 1e-63 At5g49960 binding / catalytic C.G. S.X.
0.15 7e-6 54 Populus trichocarpa PtpAffx.212441.1.S1_at pmrna24377 hypothetical protein - 4e-6 At5g49960 binding / catalytic C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.1862.3.S1_at CA644887 - - 8e-14 At1g53400 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1614428_at BQ799174 hypothetical protein LOC100266723 - 4e-135 At4g23100 GSH1 (GLUTAMATE-CYSTEINE LIGASE) C.G. S.X.
0.01 1e-1 38 Zea mays ZmAffx.1038.1.A1_at AI881773 - - 3e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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