CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49780

Gene name ATP binding / kinase/ protein serine/threonine kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g49780 835041 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.89 94.6 At2g45550 819163 CYP76C4 member of CYP76C S.X. H.G.
0.57 73.8 At2g17060 816211 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
0.55 70.6 At2g17050 816210 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
0.36 43.6 At1g21210 838716 WAK4 (wall associated kinase 4) cell wall-associated ser/thr kinase involved in cell elongation and lateral root development S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
799.0 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
357.5 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
321.3 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
274.4 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
196.4 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
109.2 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
93.9 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.8 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
91.4 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
88.8 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 0 634 At5g49760 835039 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA C.G. S.X.
0.53 5e-164 579 At5g49770 835040 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.23 5e-87 323 At5g49750 835038 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV C.G. S.X.
0.01 2e-3 46 At1g21230 838718 WAK5 (WALL ASSOCIATED KINASE 5) encodes a wall-associated kinase C.G. S.X.
0.01 3e-2 42 At5g18690 831987 AGP25 (ARABINOGALACTAN PROTEINS 25) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFB C.G. S.X.
0.01 3e-2 42 At3g47130 823866 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-2 42 At3g04690 819627 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e-2 42 At1g51805 841607 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-8 63 Glycine max GmaAffx.85374.1.S1_at BI317002 - - 2e-7 At5g49760 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.03 2e-7 57 Hordeum vulgare Contig14065_at Contig14065 - - 6e-8 At5g49770 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.04 8e-7 57 Oryza sativa Os01g0816600 NM_191078.1 - Protein kinase domain containing protein 3e-7 At5g49780 ATP binding / kinase/ protein serine/threonine kinase C.G. S.X.
0.10 6e-4 48 Populus trichocarpa PtpAffx.74807.1.S1_at CV225788 - - 5e-11 At5g49760 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.01 1e-1 40 Triticum aestivum TaAffx.84014.1.S1_at CA646297 - - 7e-2 At5g47070 protein kinase, putative C.G. S.X.
0.05 8e-9 61 Vitis vinifera 1609428_at CF215282 hypothetical protein LOC100257037 - 1e-14 At1g79620 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 7e-1 36 Zea mays Zm.9607.1.A1_at BM333712 - - 1e+0 At4g14740 phosphoinositide binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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