CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49700

Gene name DNA-binding protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g49700 835033 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMBF S.X. H.G.
0.13 5.8 At3g49790 824141 ATP binding F:ATP binding;P:biological_process unknown;C:unknown;P S.X. H.G.
0.13 5.8 At3g14230 820643 RAP2.2 encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. S.X. H.G.
0.13 5.8 At5g16340 831495 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV S.X. H.G.
0.11 4.1 At5g25350 832607 EBF2 (EIN3-BINDING F BOX PROTEIN 2) Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. S.X. H.G.
0.07 1.9 At5g06370 830525 NC domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO S.X. H.G.
0.05 1.1 At5g13360 831177 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF S.X. H.G.
0.04 0.9 At4g25170 828620 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBFO S.X. H.G.
0.04 0.9 At3g55560 824721 AGF2 (AT-hook protein of GA feedback 2) F:unknown;P:biological_process unknown;C:chloroplast;PMBOF S.X. H.G.
0.03 0.6 At1g13640 837925 phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
87.6 99.9 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
85.0 99.9 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
61.3 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.7 99.8 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
59.9 99.8 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
59.9 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
56.4 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
55.4 99.8 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
54.5 99.8 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
53.6 99.8 E-MEXP-807-raw-cel-1173272948
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 9e-98 357 At1g14490 838011 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.05 4e-7 56 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF C.G. S.X.
0.03 2e-3 44 At4g14465 827093 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM C.G. S.X.
0.03 7e-3 42 At4g35390 829692 AGF1 (AT-hook protein of GA feedback 1) F:transcription factor activity;P:negative regulation of gibberellic acid mediated signaling;C:nucleus;POBMFAV C.G. S.X.
0.05 3e-2 40 At3g60870 825258 DNA-binding protein-related F:unknown;P:unknown;C:unknown;PB C.G. S.X.
0.05 3e-2 40 At2g42940 818895 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:chloroplast;PBO C.G. S.X.
0.03 1e-1 38 At3g32980 823067 peroxidase 32 (PER32) (P32) (PRXR3) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, vacuole, membrane;PFO C.G. S.X.
0.01 4e-1 36 At5g58040 835916 ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]) Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA. C.G. S.X.
0.05 4e-1 36 At4g12050 826813 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 6e-1 36 Glycine max Gma.2331.1.S1_at BI699513 - - 3e-1 At5g49700 DNA-binding protein-related C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig11540_s_at Contig11540 - - 3e+0 At3g44190 pyridine nucleotide-disulphide oxidoreductase family protein C.G. S.X.
0.03 1e-2 42 Oryza sativa Os06g0316800 AK062370.1 - Glycine-rich protein (Fragment) 2e+0 At5g40490 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.18 1e-5 52 Populus trichocarpa PtpAffx.205441.1.S1_at pmrna10757 hypothetical protein - 8e-6 At5g49700 DNA-binding protein-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.55434.1.S1_at CA666127 - - 1e-2 At3g04640 glycine-rich protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1619143_at CF568980 - - 2e-1 At1g02710 glycine-rich protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9606.1.A1_at BM333711 hypothetical protein LOC100278162 - 1e-1 At5g08350 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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