Gene omics information

Query gene ID At5g49700
Gene name DNA-binding protein-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g49700835033DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMBFS.X.H.G.
0.135.8At3g49790824141ATP bindingF:ATP binding;P:biological_process unknown;C:unknown;PS.X.H.G.
0.135.8At3g14230820643RAP2.2encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.S.X.H.G.
0.135.8At5g16340831495AMP-binding protein, putativeF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVS.X.H.G.
0.114.1At5g25350832607EBF2 (EIN3-BINDING F BOX PROTEIN 2)Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.S.X.H.G.
0.071.9At5g06370830525NC domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBMOS.X.H.G.
0.051.1At5g13360831177auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFS.X.H.G.
0.040.9At4g25170828620-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBFOS.X.H.G.
0.040.9At3g55560824721AGF2 (AT-hook protein of GA feedback 2)F:unknown;P:biological_process unknown;C:chloroplast;PMBOFS.X.H.G.
0.030.6At1g13640837925phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
87.699.9GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
85.099.9GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
61.399.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
60.799.8GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
59.999.8GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
59.999.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
56.499.8GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
55.499.8GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
54.599.8GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.689e-98357At1g14490838011DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.054e-756At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFC.G.S.X.
0.032e-344At4g14465827093DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMC.G.S.X.
0.037e-342At4g35390829692AGF1 (AT-hook protein of GA feedback 1)F:transcription factor activity;P:negative regulation of gibberellic acid mediated signaling;C:nucleus;POBMFAVC.G.S.X.
0.053e-240At3g60870825258DNA-binding protein-relatedF:unknown;P:unknown;C:unknown;PBC.G.S.X.
0.053e-240At2g42940818895DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:chloroplast;PBOC.G.S.X.
0.031e-138At3g32980823067peroxidase 32 (PER32) (P32) (PRXR3)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, vacuole, membrane;PFOC.G.S.X.
0.014e-136At5g58040835916ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V])Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA.C.G.S.X.
0.054e-136At4g12050826813DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.066e-136Glycine maxGma.2331.1.S1_atBI699513--3e-1At5g49700DNA-binding protein-relatedC.G.S.X.
0.038e-134Hordeum vulgareContig11540_s_atContig11540--3e+0At3g44190pyridine nucleotide-disulphide oxidoreductase family proteinC.G.S.X.
0.031e-242Oryza sativaOs06g0316800AK062370.1-Glycine-rich protein (Fragment)2e+0At5g40490RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.181e-552Populus trichocarpaPtpAffx.205441.1.S1_atpmrna10757hypothetical protein-8e-6At5g49700DNA-binding protein-relatedC.G.S.X.
0.032e+034Triticum aestivumTaAffx.55434.1.S1_atCA666127--1e-2At3g04640glycine-rich proteinC.G.S.X.
0.031e-136Vitis vinifera1619143_atCF568980--2e-1At1g02710glycine-rich proteinC.G.S.X.
0.023e+032Zea maysZm.9606.1.A1_atBM333711hypothetical protein LOC100278162-1e-1At5g08350GRAM domain-containing protein / ABA-responsive protein-relatedC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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