CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49630

Gene name AAP6 (AMINO ACID PERMEASE 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At5g49630 835025 AAP6 (AMINO ACID PERMEASE 6) Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. S.X. H.G.
0.73 85.5 At2g20550 816577 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.67 81.6 At5g60450 836166 ARF4 (AUXIN RESPONSE FACTOR 4) Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. S.X. H.G.
0.55 70.6 At1g17590 838335 NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB S.X. H.G.
0.50 65.3 At4g29080 829029 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) phytochrome-associated protein 2 (PAP2) S.X. H.G.
0.50 65.3 At4g29100 829031 ethylene-responsive family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF S.X. H.G.
0.40 50.8 At2g33770 817943 PHO2 (PHOSPHATE 2) Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
121.8 99.9 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
117.7 99.9 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
102.2 99.9 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
100.3 99.9 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
96.4 99.9 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
92.1 99.9 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
84.2 99.9 GSM142647 MC002_ATH1_A9.1-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
77.4 99.9 GSM142649 MC002_ATH1_A9.3-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
77.1 99.9 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
74.2 99.9 GSM142648 MC002_ATH1_A9.2-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.31 6e-17 89 At1g58360 842205 AAP1 (AMINO ACID PERMEASE 1) Encodes AAP1 (amino acid permease 1), a neutral amino acid transporter expressed in seeds. Functions in amino acid uptake into embryos. C.G. S.X.
0.03 8e-10 65 At1g77380 844074 AAP3 Amino acid permease which transports basic amino acids. C.G. S.X.
0.08 2e-7 57 At1g10010 837536 AAP8 Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity. C.G. S.X.
0.07 8e-7 56 At1g44100 841013 AAP5 amino acid permease 5 C.G. S.X.
0.08 3e-6 54 At5g63850 836505 AAP4 Amino acid transporter whose expression is downregulated by dehydration. C.G. S.X.
0.07 1e-5 52 At5g09220 830781 AAP2 (AMINO ACID PERMEASE 2) member of AAAP family C.G. S.X.
0.05 1e-2 42 At5g23810 832446 AAP7 Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies. C.G. S.X.
0.01 2e-1 38 At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 9e-26 119 Glycine max Gma.7487.3.S1_at BQ453973 - - 4e-26 At5g49630 AAP6 (AMINO ACID PERMEASE 6) C.G. S.X.
0.08 2e-6 54 Hordeum vulgare Contig13524_at Contig13524 - - 2e-6 At5g49630 AAP6 (AMINO ACID PERMEASE 6) C.G. S.X.
0.08 9e-5 50 Oryza sativa Os07g0134000 CR292737 - Amino acid permease 6 5e+0 At2g46150 - C.G. S.X.
0.29 8e-17 89 Populus trichocarpa PtpAffx.201996.1.S1_s_at pmrna3980 amino acid permease - 7e-17 At5g49630 AAP6 (AMINO ACID PERMEASE 6) C.G. S.X.
0.07 8e-10 65 Triticum aestivum Ta.27182.1.S1_at BT009124.1 - - 8e-10 At5g49630 AAP6 (AMINO ACID PERMEASE 6) C.G. S.X.
0.06 6e-5 48 Vitis vinifera 1614222_at BQ794729 hypothetical protein LOC100257555 - 1e-4 At5g49630 AAP6 (AMINO ACID PERMEASE 6) C.G. S.X.
0.02 5e+0 32 Zea mays Zm.4977.1.S1_at AY109232.1 - - 2e-1 At1g58360 AAP1 (AMINO ACID PERMEASE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015810 The directed movement of aspartate, the anion of aspartic acid, into, out of, within or between cells.
X GO:0015827 The directed movement of tryptophan, 2-amino-3-(1H-indol-3-yl)propanoic acid, into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage