Gene omics information

Query gene ID At5g49520
Gene name WRKY48
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9195.6At5g49520835012WRKY48member of WRKY Transcription Factor; Group II-cS.X.H.G.
0.4050.8At3g25780822169AOC3 (ALLENE OXIDE CYCLASE 3)Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.S.X.H.G.
0.2726.2At1g19180838501JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.S.X.H.G.
0.146.8At3g15210820752ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.S.X.H.G.
0.114.1At5g64660836587U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBFVS.X.H.G.
0.103.4At1g76070843939unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
328.3100.0E-MEXP-1443-raw-cel-1581869863
109.199.9GSM142655MC002_ATH1_A11.3-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
104.599.9GSM142653MC002_ATH1_A11.1-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
98.499.9GSM142654MC002_ATH1_A11.2-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
94.399.9E-MEXP-1443-raw-cel-1581869921
92.499.9GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
84.899.9GSM142648MC002_ATH1_A9.2-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
77.599.9GSM131148AtGen_B-34_3-6-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
73.599.9GSM142649MC002_ATH1_A9.3-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
72.499.9GSM142647MC002_ATH1_A9.1-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.112e-1377At2g47260819339WRKY23member of WRKY Transcription Factor; Group IC.G.S.X.
0.087e-1375At4g18170827542WRKY28member of WRKY Transcription Factor; Group II-cC.G.S.X.
0.097e-1375At3g62340825407WRKY68member of WRKY Transcription Factor; Group II-cC.G.S.X.
0.122e-1067At5g46350834678WRKY8member of WRKY Transcription Factor; Group II-cC.G.S.X.
0.053e-963At2g38470818429WRKY33Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.C.G.S.X.
0.072e-448At4g39410830096WRKY13member of WRKY Transcription Factor; Group II-cC.G.S.X.
0.026e-446At3g13960820609AtGRF5 (GROWTH-REGULATING FACTOR 5)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.C.G.S.X.
0.066e-446At3g01970821270WRKY45member of WRKY Transcription Factor; Group IC.G.S.X.
0.022e-344At1g73850843721structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.169e-1065Glycine maxGma.8336.1.S1_atBQ473657WRKY86-8e-42At2g47260WRKY23C.G.S.X.
0.032e-240Hordeum vulgareHW08A07u_atHW08A07u--4e-1At5g36805-C.G.S.X.
0.083e-138Oryza sativaOs05g01831009633.m00809-WRKY transcription factor 675e-7At5g26170WRKY50C.G.S.X.
0.141e-1585Populus trichocarpaPtpAffx.207935.1.S1_atpmrna15748hypothetical protein-8e-12At2g47260WRKY23C.G.S.X.
0.026e-136Triticum aestivumTaAffx.7733.1.S1_atCA651782--4e+0At5g57820protein binding / zinc ion bindingC.G.S.X.
0.139e-22103Vitis vinifera1609130_atBQ799620hypothetical protein LOC100260212-2e-21At5g49520WRKY48C.G.S.X.
0.071e-654Zea maysZm.9492.1.A1_atBM269291WRKY11 - superfamily of TFs having WRKY and zinc finger domains-1e-3At1g69310WRKY57C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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