CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49480

Gene name ATCP1 (Ca2+-binding protein 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g49480 835008 ATCP1 (Ca2+-binding protein 1) AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl. S.X. H.G.
0.50 65.3 At2g29420 817491 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. S.X. H.G.
0.50 65.3 At4g34131 829559 UGT73B3 (UDP-glucosyl transferase 73B3) F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF S.X. H.G.
0.44 57.2 At4g13180 826932 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:response to arsenic;C:unknown;BOMFPAV S.X. H.G.
0.40 50.8 At1g55920 842043 ATSERAT2 Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.3 99.8 E-MEXP-1443-raw-cel-1581869921
37.4 99.7 E-MEXP-1443-raw-cel-1581869863
31.2 99.7 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
28.1 99.7 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
25.7 99.7 E-MEXP-1443-raw-cel-1581869632
25.7 99.7 E-MEXP-1443-raw-cel-1581869745
22.6 99.6 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
22.0 99.6 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
21.4 99.6 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
20.4 99.6 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 6e-2 38 At1g33950 840292 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:unknown;MOPBFV C.G. S.X.
0.03 2e-1 36 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.06 2e-1 36 At2g43290 818931 MSS3 (multicopy suppressors of snf4 deficiency in yeast 3) Encodes calmodulin-like MSS3. C.G. S.X.
0.01 9e-1 34 At5g20420 832164 CHR42 (chromatin remodeling 42) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAV C.G. S.X.
0.02 9e-1 34 At4g26340 828740 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 9e-1 34 At2g46250 819233 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.02 9e-1 34 At1g26410 839183 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAM C.G. S.X.
0.01 4e+0 32 At5g07980 830692 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPA C.G. S.X.
0.02 4e+0 32 At4g13330 826963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 6e-6 52 Glycine max Gma.2344.1.S1_at BG511051 - - 7e-6 At5g49480 ATCP1 (Ca2+-binding protein 1) C.G. S.X.
0.03 7e+0 30 Hordeum vulgare HVSMEl0008E13r2_at HVSMEl0008E13r2 - - 2e-2 At1g80640 protein kinase family protein C.G. S.X.
0.03 7e+0 32 Oryza sativa OsAffx.2022.1.S1_at - - - 0 C.G. S.X.
0.11 4e-10 65 Populus trichocarpa PtpAffx.207937.1.S1_at pmrna15754 hypothetical protein - 3e-10 At5g49480 ATCP1 (Ca2+-binding protein 1) C.G. S.X.
0.04 4e+0 32 Triticum aestivum Ta.319.3.A1_at BJ222943 - - 3e+0 At3g57958 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1615277_at CF201654.1 - - 4e-31 At1g27970 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) C.G. S.X.
0.02 6e+0 30 Zea mays Zm.2227.1.A1_at BM381059 hypothetical protein LOC100191593 - 6e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042538 A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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