Gene omics information

Query gene ID At5g49480
Gene name ATCP1 (Ca2+-binding protein 1)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At5g49480835008ATCP1 (Ca2+-binding protein 1)AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.S.X.H.G.
0.5065.3At2g29420817491ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.S.X.H.G.
0.5065.3At4g34131829559UGT73B3 (UDP-glucosyl transferase 73B3)F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOFS.X.H.G.
0.4457.2At4g13180826932short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:response to arsenic;C:unknown;BOMFPAVS.X.H.G.
0.4050.8At1g55920842043ATSERAT2Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
31.299.7GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
28.199.7GSM131282AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
22.699.6GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
22.099.6GSM204026protoplast_control_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
21.499.6GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
20.499.6GSM205160protoplast_controlDNA_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.036e-238At1g33950840292avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:unknown;MOPBFVC.G.S.X.
0.032e-136At4g32800829416AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.C.G.S.X.
0.062e-136At2g43290818931MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)Encodes calmodulin-like MSS3.C.G.S.X.
0.019e-134At5g20420832164CHR42 (chromatin remodeling 42)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAVC.G.S.X.
0.029e-134At4g26340828740F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.029e-134At2g46250819233myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.029e-134At1g26410839183FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAMC.G.S.X.
0.014e+032At5g07980830692dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAC.G.S.X.
0.024e+032At4g13330826963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.066e-652Glycine maxGma.2344.1.S1_atBG511051--7e-6At5g49480ATCP1 (Ca2+-binding protein 1)C.G.S.X.
0.037e+030Hordeum vulgareHVSMEl0008E13r2_atHVSMEl0008E13r2--2e-2At1g80640protein kinase family proteinC.G.S.X.
0.037e+032Oryza sativaOsAffx.2022.1.S1_at---0C.G.S.X.
0.114e-1065Populus trichocarpaPtpAffx.207937.1.S1_atpmrna15754hypothetical protein-3e-10At5g49480ATCP1 (Ca2+-binding protein 1)C.G.S.X.
0.044e+032Triticum aestivumTa.319.3.A1_atBJ222943--3e+0At3g57958unknown proteinC.G.S.X.
0.031e+032Vitis vinifera1615277_atCF201654.1--4e-31At1g27970NTF2B (NUCLEAR TRANSPORT FACTOR 2B)C.G.S.X.
0.026e+030Zea maysZm.2227.1.A1_atBM381059hypothetical protein LOC100191593-6e-3At3g04720PR4 (PATHOGENESIS-RELATED 4)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0042538A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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