Gene omics information

Query gene ID At5g49320
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g49320834992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9998.1At5g02140831881thaumatin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOVS.X.H.G.
0.9998.1At1g05760837084RTM1 (restricted tev movement 1)Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistanceS.X.H.G.
0.9998.1At2g27140817256heat shock family proteinF:molecular_function unknown;P:response to heat;C:membrane;PBOMS.X.H.G.
0.9998.1At1g05770837085jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9998.1At1g61760842473harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.9998.1At3g17380821002meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOS.X.H.G.
0.9998.1At5g38070833787zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVS.X.H.G.
0.9998.1At5g45320834568-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9897.8At1g05610837066APS2 (ADP-glucose pyrophoshorylase small subunit 2)Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1157.7100.0GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
976.9100.0GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
906.1100.0GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
413.7100.0GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
199.0100.0GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
152.099.9GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
151.599.9GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
68.399.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
67.399.8GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
53.199.8GSM226549Slice7JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-342At1g17840838363WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix.C.G.S.X.
0.024e-136At5g04340830313ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)putative c2h2 zinc finger transcription factor mRNA,C.G.S.X.
0.024e-136At3g03230821322esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:membrane;PBOFC.G.S.X.
0.022e+034At5g35550833520TT2 (TRANSPARENT TESTA 2)TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.C.G.S.X.
0.022e+034At3g54750824640unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.022e+034At2g41040818703methyltransferase-relatedF:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFMC.G.S.X.
0.016e+032At5g38240833806serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.016e+032At5g58930836010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.23937.1.A1_atBG155414--6e-2At5g35620LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)C.G.S.X.
0.033e+032Hordeum vulgareHV13D09r_atHV13D09r--4e+0At5g36960unknown proteinC.G.S.X.
0.033e+034Oryza sativaOs01g0681000AK099862.1-Protein of unknown function DUF1298 domaincontaining protein4e-3At1g20900ESC (ESCAROLA)C.G.S.X.
0.041e-138Populus trichocarpaPtpAffx.207958.1.S1_atpmrna15801hypothetical protein-1e-1At5g49320unknown proteinC.G.S.X.
0.036e+032Triticum aestivumTa.5286.1.S1_atBJ280150--3e+0At3g20850proline-rich family proteinC.G.S.X.
0.031e-136Vitis vinifera1612019_atBQ800502--3e-1At2g33470GLTP1 (glycolipid transfer protein 1)C.G.S.X.
0.036e-134Zea maysZm.4349.1.A1_atCF625286--4e-7At1g17720ATB BETAC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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