CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49320

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g49320 834992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.99 98.1 At5g02140 831881 thaumatin-like protein, putative F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOV S.X. H.G.
0.99 98.1 At1g05760 837084 RTM1 (restricted tev movement 1) Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance S.X. H.G.
0.99 98.1 At2g27140 817256 heat shock family protein F:molecular_function unknown;P:response to heat;C:membrane;PBOM S.X. H.G.
0.99 98.1 At1g05770 837085 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.99 98.1 At1g61760 842473 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.99 98.1 At3g17380 821002 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
0.99 98.1 At5g38070 833787 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV S.X. H.G.
0.99 98.1 At5g45320 834568 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.98 97.8 At1g05610 837066 APS2 (ADP-glucose pyrophoshorylase small subunit 2) Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1157.7 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
976.9 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
906.1 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
413.7 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
199.0 100.0 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
152.0 99.9 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
151.5 99.9 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
68.3 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
67.3 99.8 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
53.1 99.8 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-3 42 At1g17840 838363 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix. C.G. S.X.
0.02 4e-1 36 At5g04340 830313 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) putative c2h2 zinc finger transcription factor mRNA, C.G. S.X.
0.02 4e-1 36 At3g03230 821322 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:membrane;PBOF C.G. S.X.
0.02 2e+0 34 At5g35550 833520 TT2 (TRANSPARENT TESTA 2) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. C.G. S.X.
0.02 2e+0 34 At3g54750 824640 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.02 2e+0 34 At2g41040 818703 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM C.G. S.X.
0.01 6e+0 32 At5g38240 833806 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 6e+0 32 At5g58930 836010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.23937.1.A1_at BG155414 - - 6e-2 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HV13D09r_at HV13D09r - - 4e+0 At5g36960 unknown protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os01g0681000 AK099862.1 - Protein of unknown function DUF1298 domaincontaining protein 4e-3 At1g20900 ESC (ESCAROLA) C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.207958.1.S1_at pmrna15801 hypothetical protein - 1e-1 At5g49320 unknown protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum Ta.5286.1.S1_at BJ280150 - - 3e+0 At3g20850 proline-rich family protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1612019_at BQ800502 - - 3e-1 At2g33470 GLTP1 (glycolipid transfer protein 1) C.G. S.X.
0.03 6e-1 34 Zea mays Zm.4349.1.A1_at CF625286 - - 4e-7 At1g17720 ATB BETA C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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