CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49310

Gene name IMPA-5 (IMPORTIN ALPHA ISOFORM 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.85 92.4 At5g49310 834991 IMPA-5 (IMPORTIN ALPHA ISOFORM 5) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. S.X. H.G.
0.67 81.6 At2g04490 3768047 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.66 80.1 At1g28160 839710 ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. S.X. H.G.
0.64 78.9 At1g77860 844122 KOM (KOMPEITO) mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein S.X. H.G.
0.63 78.1 At3g22250 821795 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF S.X. H.G.
0.63 78.1 At1g20800 838671 F-box family protein F-box family protein S.X. H.G.
0.63 78.1 At2g31420 817700 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
0.62 77.3 At5g52800 835357 DNA primase F:DNA primase activity;P:DNA replication;C:cellular_component unknown;MOPV S.X. H.G.
0.61 76.7 At2g44030 819008 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBOFAV S.X. H.G.
0.60 75.7 At4g18770 827611 MYB98 (myb domain protein 98) MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
310.0 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
240.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
197.7 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
196.0 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
189.3 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
185.5 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
180.7 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
179.9 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
178.7 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
165.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 2e-51 204 At3g06720 819857 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.20 2e-35 151 At1g32880 840182 importin alpha-1 subunit, putative F:protein transporter activity, binding;P:intracellular protein transport;C:cellular_component unknown;MPFO C.G. S.X.
0.38 5e-33 143 At5g52000 835275 IMPA-8 (IMPORTIN ALPHA ISOFORM 8) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.17 4e-18 93 At4g16143 827302 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.08 6e-11 69 At3g05720 819741 IMPA-7 (IMPORTIN ALPHA ISOFORM 7) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.10 3e-6 54 At4g02150 827472 MOS6 (MODIFIER OF SNC1, 6) Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.02 8e-4 46 At5g15610 831413 proteasome family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 5e-9 63 Glycine max Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.13 3e-17 89 Hordeum vulgare Contig4129_at Contig4129 - - 9e-26 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.14 5e-16 87 Oryza sativa Os01g0253300 AB004660.1 - Importin alpha 2 6e-24 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.12 2e-11 71 Populus trichocarpa PtpAffx.4546.1.S1_at CV260331 hypothetical protein - 8e-113 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.12 9e-7 56 Triticum aestivum TaAffx.112914.1.S1_at CA619852 - - 1e-12 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.07 1e-3 44 Vitis vinifera 1607723_at CF568821 - - 5e-18 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.13 2e-8 59 Zea mays Zm.4271.2.S1_a_at AY103821.1 hypothetical protein LOC100193437 - 2e-20 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L GO:0006606 The directed movement of a protein from the cytoplasm to the nucleus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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