CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49270

Gene name SHV2 (SHAVEN 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. S.X. H.G.
1.00 100.0 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.91 95.6 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.80 89.8 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO S.X. H.G.
0.75 86.9 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.63 78.1 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB S.X. H.G.
0.61 76.7 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
255.5 100.0 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
194.7 100.0 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
158.1 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
146.2 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
141.8 99.9 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
141.5 99.9 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
130.5 99.9 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
126.4 99.9 GSM184836 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE7639 Expression analysis of root developmental zones after treatment with salt
112.8 99.9 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
110.9 99.9 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 7e-5 50 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. C.G. S.X.
0.05 2e-2 42 At4g16120 827298 COBL7 (COBRA-LIKE 7) putative membrane-anchored cell wall protein C.G. S.X.
0.02 6e-2 40 At4g27110 828819 COBL11 (COBRA-LIKE PROTEIN 11 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
0.02 3e-1 38 At4g28310 828946 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.01 3e-1 38 At3g06145 819788 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 36 At4g21770 828265 pseudouridine synthase family protein F:pseudouridine synthase activity;P:pseudouridine synthesis;C:chloroplast;BOMFP C.G. S.X.
0.01 1e+0 36 At4g22740 828370 glycine-rich protein F:molecular_function unknown;P:unknown;C:plasma membrane;MPBOFVA C.G. S.X.
0.05 1e+0 36 At3g16860 820941 COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.76107.1.S1_at BE020159 - - 3e-1 At4g16120 COBL7 (COBRA-LIKE 7) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig19972_at Contig19972 - - 9e-1 At1g32540 LOL1 (LSD ONE LIKE 1) C.G. S.X.
0.01 2e+0 36 Oryza sativa Os11g0434850 9639.m02187 - - 6e+0 At4g04870 CLS (CARDIOLIPIN SYNTHASE) C.G. S.X.
0.01 3e-1 38 Populus trichocarpa Ptp.1253.1.S1_at CK109716 hypothetical protein - 5e-1 At5g09960 unknown protein C.G. S.X.
0.01 3e-1 38 Triticum aestivum Ta.11076.2.A1_a_at CA637965 - - 4e+0 At1g26290 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1608991_at CA816013 hypothetical protein LOC100255967 - 8e-11 At1g67300 hexose transporter, putative C.G. S.X.
0.01 2e+0 34 Zea mays Zm.5576.1.A1_at AI622800 hypothetical protein LOC100279702 - 2e-1 At3g30200 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048765 The process whereby a relatively unspecialized cell acquires specialized features of a root hair cell.
X GO:0010053 The process whereby a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast.
X GO:0009932 Growth that occurs specifically at the tip of a cell.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage