CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49180

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. S.X. H.G.
1.00 100.0 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV S.X. H.G.
1.00 100.0 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. S.X. H.G.
0.91 95.6 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. S.X. H.G.
0.83 91.4 At2g46960 819310 CYP709B1 member of CYP709B S.X. H.G.
0.73 85.5 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
486.1 100.0 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
327.5 100.0 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
295.1 100.0 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
276.3 100.0 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
273.1 100.0 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
242.8 100.0 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
242.3 100.0 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
226.5 100.0 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
215.2 100.0 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
196.7 100.0 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 5e-27 123 At3g06830 819867 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAM C.G. S.X.
0.04 2e-11 71 At4g15980 827282 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:apoplast, plant-type cell wall;BMOPFAV C.G. S.X.
0.03 6e-8 59 At3g49220 824083 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.08 4e-6 54 At5g27870 832850 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;BMOFPVA C.G. S.X.
0.02 6e-5 50 At3g62170 825390 VGDH2 (Vanguard 1 homolog 2) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.06 9e-4 46 At3g05610 819727 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;OBPFMVA C.G. S.X.
0.01 1e-2 42 At2g45220 819130 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOM C.G. S.X.
0.02 6e-2 40 At4g00190 828218 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFOAM C.G. S.X.
0.01 2e-1 38 At4g02300 827708 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-1 38 Glycine max GmaAffx.69548.1.S1_s_at BQ630736 - - 5e-6 At2g47550 pectinesterase family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HA06d12r_at HA06d12r - - 1e+1 At5g60950 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) C.G. S.X.
0.02 2e+0 36 Oryza sativa Os02g0226100 9630.m01222 - - 2e+0 At3g18518 RTFL20 (ROTUNDIFOLIA LIKE 20) C.G. S.X.
0.06 8e-11 69 Populus trichocarpa PtpAffx.208468.1.S1_at pmrna16820 hypothetical protein - 6e-5 At4g15980 pectinesterase family protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.8944.1.S1_at CA617668 - - 4e+0 At1g67740 PSBY C.G. S.X.
0.04 4e-6 52 Vitis vinifera 1615574_at CB977067 hypothetical protein LOC100245304 - 7e-9 At2g45220 pectinesterase family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.17489.1.A1_at CK369860 sulfated surface glycoprotein 185 - 3e-1 At1g75550 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00040 Pentose and glucuronate interconversions
00500 Starch and sucrose metabolism
01100 Metabolic pathways
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