Gene omics information

Query gene ID At5g49180
Gene name pectinesterase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.S.X.H.G.
1.00100.0At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVS.X.H.G.
1.00100.0At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.S.X.H.G.
0.9195.6At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.S.X.H.G.
0.8391.4At2g46960819310CYP709B1member of CYP709BS.X.H.G.
0.7385.5At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
486.1100.0GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
327.5100.0GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
295.1100.0GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
276.3100.0GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
273.1100.0GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
242.8100.0GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
242.3100.0GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
226.5100.0GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
215.2100.0GSM133820Yang_1-5_young-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
196.7100.0GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.485e-27123At3g06830819867pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAMC.G.S.X.
0.042e-1171At4g15980827282pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:apoplast, plant-type cell wall;BMOPFAVC.G.S.X.
0.036e-859At3g49220824083pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMC.G.S.X.
0.084e-654At5g27870832850pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;BMOFPVAC.G.S.X.
0.026e-550At3g62170825390VGDH2 (Vanguard 1 homolog 2)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.069e-446At3g05610819727pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;OBPFMVAC.G.S.X.
0.011e-242At2g45220819130pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOMC.G.S.X.
0.026e-240At4g00190828218pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFOAMC.G.S.X.
0.012e-138At4g02300827708pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-138Glycine maxGmaAffx.69548.1.S1_s_atBQ630736--5e-6At2g47550pectinesterase family proteinC.G.S.X.
0.022e+034Hordeum vulgareHA06d12r_atHA06d12r--1e+1At5g60950COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)C.G.S.X.
0.022e+036Oryza sativaOs02g02261009630.m01222--2e+0At3g18518RTFL20 (ROTUNDIFOLIA LIKE 20)C.G.S.X.
0.068e-1169Populus trichocarpaPtpAffx.208468.1.S1_atpmrna16820hypothetical protein-6e-5At4g15980pectinesterase family proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.8944.1.S1_atCA617668--4e+0At1g67740PSBYC.G.S.X.
0.044e-652Vitis vinifera1615574_atCB977067hypothetical protein LOC100245304-7e-9At2g45220pectinesterase family proteinC.G.S.X.
0.012e+034Zea maysZm.17489.1.A1_atCK369860sulfated surface glycoprotein 185-3e-1At1g75550glycine-rich proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00422Link to KaPPA-View 4Carbohydrate esterases
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00040Link to KEGG PATHWAYPentose and glucuronate interconversions
00500Link to KEGG PATHWAYStarch and sucrose metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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