Gene omics information

Query gene ID At5g49110
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3846.7At5g49110834970unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVS.X.H.G.
0.3338.1At5g18810831999SCL28encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks.S.X.H.G.
0.2115.8At5g03780831726TRFL10 (TRF-LIKE 10)Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.S.X.H.G.
0.135.8At4g14970827156unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBS.X.H.G.
0.071.9At1g13330837893-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
292.9100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
256.8100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
213.6100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
202.0100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
198.9100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
197.8100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
196.2100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
191.8100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
186.1100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
178.8100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-138At5g42650834273AOS (ALLENE OXIDE SYNTHASE)Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.C.G.S.X.
0.016e-138At4g08560826417APUM15 (Arabidopsis Pumilio 15)F:RNA binding, binding;P:unknown;C:endomembrane system;FMOPC.G.S.X.
0.016e-138At3g26750822288unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.016e-138At2g15490816041UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOFC.G.S.X.
0.016e-138At2g15480816040UGT73B5 (UDP-glucosyl transferase 73B5)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOFC.G.S.X.
0.016e-138At1g48870841309WD-40 repeat family proteinF:protein phosphatase type 2A regulator activity, signal transducer activity;P:signal transduction;C:protein phosphatase type 2A complex, heterotrimeric G-protein complex;MFBOPAC.G.S.X.
0.012e+036At5g19570832077unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.015e-242Glycine maxHgAffx.15376.1.S1_atCB281618--3e+0Atcg00150-C.G.S.X.
0.017e-240Hordeum vulgareContig15744_atContig15744--2e-15At5g19420Ran GTPase binding / chromatin binding / zinc ion bindingC.G.S.X.
0.013e-140Oryza sativaOsAffx.6703.1.S1_s_at---0C.G.S.X.
0.109e-1377Populus trichocarpaPtpAffx.208475.1.S1_atpmrna16836hypothetical protein-6e-13At5g49110unknown proteinC.G.S.X.
0.011e-140Triticum aestivumTa.26554.1.A1_atCD491197--4e-1At5g54750transport protein particle (TRAPP) component Bet3, putativeC.G.S.X.
0.017e-446Vitis vinifera1616293_atCF212351hypothetical protein LOC100256817-1e-3At3g44750HDA3 (HISTONE DEACETYLASE 3)C.G.S.X.
0.011e+036Zea maysZm.2725.1.A1_atBE510988--6e+0Atmg01040-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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