CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49100

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At5g49100 834969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPV S.X. H.G.
0.67 81.6 At3g26640 822276 LWD2 (LIGHT-REGULATED WD 2) F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBA S.X. H.G.
0.57 73.8 At5g03345 831867 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO S.X. H.G.
0.40 50.8 At3g13070 820495 CBS domain-containing protein / transporter associated domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFA S.X. H.G.
0.38 46.7 At3g57360 824903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
237.4 100.0 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
65.5 99.8 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
42.9 99.8 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
41.9 99.8 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.4 99.8 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.9 99.7 GSM184528 Stele root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.7 99.7 GSM184522 Stele root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
28.5 99.7 GSM133779 Lindsey_1-5_globular-basal_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.5 99.7 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
25.3 99.6 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 6e-41 169 At3g06868 6241205 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV C.G. S.X.
0.13 6e-41 169 At3g06870 819871 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVB C.G. S.X.
0.03 2e-3 44 At5g03550 831790 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-3 44 At1g64080 842712 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFBPV C.G. S.X.
0.01 1e-2 42 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 1e-2 42 At1g28530 839753 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.03 1e-2 42 At1g02660 839544 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV C.G. S.X.
0.02 1e-2 42 At1g78180 844154 binding F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO C.G. S.X.
0.02 1e-2 42 At1g64150 842719 unknown protein F:unknown;P:unknown;C:chloroplast, membrane;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-18 93 Glycine max GmaAffx.58662.1.S1_at AW755793 - - 2e-17 At3g06870 proline-rich family protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare Contig3787_at Contig3787 - - 6e+0 At3g32160 unknown protein C.G. S.X.
0.03 3e-1 38 Oryza sativa Os11g0294901 9639.m01762 - - 6e-1 At5g22680 - C.G. S.X.
0.18 4e-24 113 Populus trichocarpa PtpAffx.224622.1.S1_at pmrna43332 hypothetical protein - 3e-24 At5g49100 unknown protein C.G. S.X.
0.05 2e-1 38 Triticum aestivum Ta.12764.1.A1_at BQ161775 - - 2e+0 At3g53402 CPuORF46 (Conserved peptide upstream open reading frame 46) C.G. S.X.
0.04 2e-1 36 Vitis vinifera 1622507_at CB975105 - - 6e-20 At1g51410 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.04 7e-2 38 Zea mays Zm.8561.2.A1_a_at BM332166 hypothetical protein LOC100277438 - 4e+0 At4g05070 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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