CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g49030

Gene name OVA2 (ovule abortion 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g49030 834962 OVA2 (ovule abortion 2) F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFP S.X. H.G.
0.71 84.2 At4g23940 828494 FtsH protease, putative F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV S.X. H.G.
0.60 75.7 At1g79560 844294 FTSH12 (FTSH PROTEASE 12) encodes an FtsH protease that is localized to the chloroplast S.X. H.G.
0.55 70.6 At1g06950 837205 TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. S.X. H.G.
0.55 70.6 At3g04340 819589 emb2458 (embryo defective 2458) F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV S.X. H.G.
0.44 57.2 At3g16290 820876 EMB2083 (embryo defective 2083) F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV S.X. H.G.
0.28 30.3 At3g10160 820179 DFC (DHFS-FPGS HOMOLOG C) Encodes a protein with tetrahydrofolylpolyglutamate synthase activity that is located in the mitochondrial matrix. S.X. H.G.
0.24 20.7 At5g16715 831533 EMB2247 (embryo defective 2247) F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.6 99.7 GSM311273 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
16.7 99.5 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.0 99.4 GSM131471 ATGE_7_A2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
13.5 99.4 E-TABM-21-raw-cel-529816648
13.2 99.4 E-TABM-21-raw-cel-529816282
12.2 99.3 E-TABM-21-raw-cel-529816403
12.1 99.3 E-TABM-21-raw-cel-529816080
11.9 99.3 E-TABM-21-raw-cel-529816526
11.6 99.3 E-TABM-21-raw-cel-529816608
11.3 99.3 GSM183511 MYB76_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-1 38 At4g37100 829864 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBA C.G. S.X.
0.01 2e+0 36 At4g21060 827853 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFB C.G. S.X.
0.01 2e+0 36 At4g39190 830074 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.00 2e+0 36 At4g36080 829764 FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:unknown;MFOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 9e-34 147 Glycine max Gma.2159.1.S1_at BI970548 - - 3e-34 At5g49030 OVA2 (ovule abortion 2) C.G. S.X.
0.26 1e-21 105 Hordeum vulgare Contig8638_at Contig8638 - - 2e-21 At5g49030 OVA2 (ovule abortion 2) C.G. S.X.
0.22 2e-17 93 Oryza sativa Os02g0778200 AK065948.1 - Isoleucyl-tRNA synthetase, class Ia family protein 9e-18 At5g49030 OVA2 (ovule abortion 2) C.G. S.X.
0.49 3e-92 341 Populus trichocarpa PtpAffx.208491.1.S1_at pmrna16864 hypothetical protein - 2e-92 At5g49030 OVA2 (ovule abortion 2) C.G. S.X.
0.09 7e-6 54 Triticum aestivum Ta.9700.1.S1_x_at CK154348 - - 5e-6 At5g49030 OVA2 (ovule abortion 2) C.G. S.X.
0.03 5e-4 46 Vitis vinifera 1616415_at CF405075 hypothetical protein LOC100254604 - 3e-4 At5g49030 OVA2 (ovule abortion 2) C.G. S.X.
0.03 1e-2 42 Zea mays Zm.15863.1.A1_at BM078830 - - 6e-3 At5g49030 OVA2 (ovule abortion 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048481 The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
C GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00067 tRNA-charging-pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00290 Valine, leucine and isoleucine biosynthesis
00970 Aminoacyl-tRNA biosynthesis
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