Gene omics information

Query gene ID At5g49030
Gene name OVA2 (ovule abortion 2)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g49030834962OVA2 (ovule abortion 2)F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFPS.X.H.G.
0.7184.2At4g23940828494FtsH protease, putativeF:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAVS.X.H.G.
0.6075.7At1g79560844294FTSH12 (FTSH PROTEASE 12)encodes an FtsH protease that is localized to the chloroplastS.X.H.G.
0.5570.6At1g06950837205TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis.S.X.H.G.
0.5570.6At3g04340819589emb2458 (embryo defective 2458)F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVS.X.H.G.
0.4457.2At3g16290820876EMB2083 (embryo defective 2083)F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVS.X.H.G.
0.2830.3At3g10160820179DFC (DHFS-FPGS HOMOLOG C)Encodes a protein with tetrahydrofolylpolyglutamate synthase activity that is located in the mitochondrial matrix.S.X.H.G.
0.2420.7At5g16715831533EMB2247 (embryo defective 2247)F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFPS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.699.7GSM311273Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
16.799.5GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.099.4GSM131471ATGE_7_A2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-138At4g37100829864catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBAC.G.S.X.
0.012e+036At4g21060827853galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFBC.G.S.X.
0.012e+036At4g39190830074unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.002e+036At4g36080829764FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:unknown;MFOPC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.149e-34147Glycine maxGma.2159.1.S1_atBI970548--3e-34At5g49030OVA2 (ovule abortion 2)C.G.S.X.
0.261e-21105Hordeum vulgareContig8638_atContig8638--2e-21At5g49030OVA2 (ovule abortion 2)C.G.S.X.
0.222e-1793Oryza sativaOs02g0778200AK065948.1-Isoleucyl-tRNA synthetase, class Ia family protein9e-18At5g49030OVA2 (ovule abortion 2)C.G.S.X.
0.493e-92341Populus trichocarpaPtpAffx.208491.1.S1_atpmrna16864hypothetical protein-2e-92At5g49030OVA2 (ovule abortion 2)C.G.S.X.
0.097e-654Triticum aestivumTa.9700.1.S1_x_atCK154348--5e-6At5g49030OVA2 (ovule abortion 2)C.G.S.X.
0.035e-446Vitis vinifera1616415_atCF405075hypothetical protein LOC100254604-3e-4At5g49030OVA2 (ovule abortion 2)C.G.S.X.
0.031e-242Zea maysZm.15863.1.A1_atBM078830--6e-3At5g49030OVA2 (ovule abortion 2)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048481The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
CGO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00067Link to KaPPA-View 4tRNA-charging-pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00290Link to KEGG PATHWAYValine, leucine and isoleucine biosynthesis
00970Link to KEGG PATHWAYAminoacyl-tRNA biosynthesis
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage