CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48950

Gene name thioesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.68 82.2 At5g48950 834953 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP S.X. H.G.
0.42 53.9 At1g56270 842080 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.39 48.4 At4g30590 829182 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P S.X. H.G.
0.38 46.7 At1g55580 842007 LAS (Lateral Suppressor) Encodes a member of the GRAS family of putative transcriptional regulators. It is involved in the initiation of axillary meristems during both the vegetative and reproductive growth phases and functions upstream of REV and AXR1 in the regulation of shoot branching. S.X. H.G.
0.37 45.0 At4g31710 829299 ATGLR2.4 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.37 45.0 At4g25540 828659 MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G). S.X. H.G.
0.36 43.6 At5g55370 835630 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOF S.X. H.G.
0.36 43.6 At2g24310 816967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA S.X. H.G.
0.36 43.6 At2g35460 818111 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
0.36 43.6 At3g02590 820687 delta 7-sterol-C5-desaturase, putative F:oxidoreductase activity, C-5 sterol desaturase activity, iron ion binding;P:oxidation reduction, sterol biosynthetic process, fatty acid biosynthetic process;C:endoplasmic reticulum;OBFMP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
270.0 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
213.3 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
194.2 100.0 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
159.8 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
139.1 99.9 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
116.5 99.9 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
93.4 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
59.1 99.8 GSM131106 Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
33.2 99.7 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
32.7 99.7 GSM131108 Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-2 40 At4g23030 828402 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM C.G. S.X.
0.02 6e-2 38 At5g39785 833974 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV C.G. S.X.
0.02 2e-1 36 At3g28690 822499 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 9e-1 34 At2g38560 818438 TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy. C.G. S.X.
0.01 9e-1 34 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA C.G. S.X.
0.01 9e-1 34 At1g22060 838811 - F:unknown;P:unknown;C:vacuole;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-3 42 Glycine max Gma.16441.1.S1_a_at BU548048 - - 5e-25 At1g48320 thioesterase family protein C.G. S.X.
0.07 5e-4 44 Hordeum vulgare Contig12737_at Contig12737 - - 2e-3 At5g48950 thioesterase family protein C.G. S.X.
0.05 1e-4 48 Oryza sativa Os03g0691400 AK071319.1 - Thioesterase superfamily domain containing protein 1e-4 At5g48950 thioesterase family protein C.G. S.X.
0.08 8e-2 38 Populus trichocarpa PtpAffx.5931.1.A1_a_at AJ779880 hypothetical protein - 1e-1 At5g48950 thioesterase family protein C.G. S.X.
0.07 1e-3 44 Triticum aestivum Ta.11463.3.S1_at CA654705 - - 1e-3 At5g48950 thioesterase family protein C.G. S.X.
0.03 7e-2 36 Vitis vinifera 1620533_at CB839478 - - 3e-1 At5g48950 thioesterase family protein C.G. S.X.
0.05 4e-4 44 Zea mays Zm.18012.1.A1_at CK827313 - - 2e-3 At5g48950 thioesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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