Gene omics information

Query gene ID At5g48940
Gene name leucine-rich repeat transmembrane protein kinase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAS.X.H.G.
0.7586.9At3g30350822736unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7586.9At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.S.X.H.G.
0.7385.5At3g15240820755--S.X.H.G.
0.5065.3At2g16230816120catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
94.799.9GSM265427Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
83.799.9GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
78.599.9GSM265418Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
72.799.9GSM265419Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
65.099.8GSM184528Stele root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
64.399.8GSM184522Stele root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
62.899.8GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
61.099.8GSM184525Stele root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
56.299.8GSM265426Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
50.899.8GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.093e-1481At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.033e-861At1g34110840310leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.011e-759At3g19300821464protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.012e-656At4g28490828967HAE (HAESA)member of Receptor kinase-like protein familyC.G.S.X.
0.021e-450At2g33170817878leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.015e-448At5g25930832662leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAC.G.S.X.
0.017e-344At5g44700834499GSO2 (GASSHO 2)Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.C.G.S.X.
0.017e-344At4g26540828760kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.017e-344At2g48010819413RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)receptor-like serine/threonine kinase (RKF3)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-450Glycine maxGmaAffx.40192.1.S1_atBI497834--4e-4At5g65710HSL2 (HAESA-Like 2)C.G.S.X.
0.016e-550Hordeum vulgareContig10148_atContig10148--2e-22At5g65700BAM1 (BARELY ANY MERISTEM 1)C.G.S.X.
0.031e-1277Oryza sativaOs04g0132500AK121779.1-Protein kinase domain containing protein5e-4At3g24240leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.131e-38163Populus trichocarpaPtpAffx.200207.1.S1_s_atpmrna393hypothetical protein-2e-28At3g24240leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.011e-450Triticum aestivumTaAffx.120936.1.S1_atBJ307684--1e-25At5g65700BAM1 (BARELY ANY MERISTEM 1)C.G.S.X.
0.026e-756Vitis vinifera1607952_atCF372631hypothetical protein LOC100250523-3e-8At1g28440HSL1 (HAESA-Like 1)C.G.S.X.
0.013e+034Zea maysZmAffx.895.1.A1_atAI770878--8e-4At3g56370leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006468The process of introducing a phosphate group on to a protein.
CGO:0007169The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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