Gene omics information

Query gene ID At5g48840
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3541.6At5g48840834942PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate.S.X.H.G.
0.5773.8At1g05590837064HEXO2 (BETA-HEXOSAMINIDASE 2)Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.S.X.H.G.
0.3643.6At3g07440819932unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.146.8At5g64150836536methylase family proteinF:protein methyltransferase activity, methyltransferase activity, catalytic activity, nucleic acid binding;P:methylation, protein amino acid methylation;C:chloroplast;BOMFAPS.X.H.G.
0.114.1At4g00231826583MEE50 (maternal effect embryo arrest 50)F:binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFPOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
86.899.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At5g22790832342RER1 (RETICULATA-RELATED 1)F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVAC.G.S.X.
0.015e-136At1g076155007670GTP bindingF:GTP binding;P:unknown;C:intracellular;BOMFAPVC.G.S.X.
0.012e+034At5g59830836104unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.022e+034At5g18560831974PUCHIencodes PUCHI, a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis.C.G.S.X.
0.022e+034At3g52850824451VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles.C.G.S.X.
0.022e+034At3g24570822053peroxisomal membrane 22 kDa family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, integral to membrane, peroxisomal membrane;MFPOC.G.S.X.
0.022e+034At3g43990823516bromo-adjacent homology (BAH) domain-containing proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.077e-756Glycine maxGmaAffx.47368.1.S1_atBU965091--2e-7At5g48840PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)C.G.S.X.
0.042e-136Hordeum vulgareContig16075_atContig16075--4e-1At5g48840PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)C.G.S.X.
0.026e-240Oryza sativaOs01g0150900AK058767.1-Hypothetical protein9e-1At1g07060unknown proteinC.G.S.X.
0.222e-32141Populus trichocarpaPtpAffx.202652.1.S1_atpmrna5299hypothetical protein-1e-32At5g48840PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)C.G.S.X.
0.051e-138Triticum aestivumTa.27416.1.S1_atBT009390.1--2e-1At5g48840PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)C.G.S.X.
0.039e+030Vitis vinifera1620036_atCF405991hypothetical protein LOC100253221-4e+0At5g60830AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)C.G.S.X.
0.023e+032Zea maysZmAffx.566.1.A1_atAI714636--2e-1At5g05610AL1 (ALFIN-LIKE 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
XGO:0015940The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00033Link to KaPPA-View 4Pantothenate and coenzyme A biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00410Link to KEGG PATHWAYbeta-Alanine metabolism
00770Link to KEGG PATHWAYPantothenate and CoA biosynthesis
01100Link to KEGG PATHWAYMetabolic pathways
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