CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48840

Gene name PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At5g48840 834942 PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate. S.X. H.G.
0.57 73.8 At1g05590 837064 HEXO2 (BETA-HEXOSAMINIDASE 2) Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3. S.X. H.G.
0.36 43.6 At3g07440 819932 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.14 6.8 At5g64150 836536 methylase family protein F:protein methyltransferase activity, methyltransferase activity, catalytic activity, nucleic acid binding;P:methylation, protein amino acid methylation;C:chloroplast;BOMFAP S.X. H.G.
0.11 4.1 At4g00231 826583 MEE50 (maternal effect embryo arrest 50) F:binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
123.5 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
116.4 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
100.5 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
88.0 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
86.8 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
86.4 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.9 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.5 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.4 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.5 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At5g22790 832342 RER1 (RETICULATA-RELATED 1) F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVA C.G. S.X.
0.01 5e-1 36 At1g07615 5007670 GTP binding F:GTP binding;P:unknown;C:intracellular;BOMFAPV C.G. S.X.
0.01 2e+0 34 At5g59830 836104 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 2e+0 34 At5g18560 831974 PUCHI encodes PUCHI, a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis. C.G. S.X.
0.02 2e+0 34 At3g52850 824451 VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles. C.G. S.X.
0.02 2e+0 34 At3g24570 822053 peroxisomal membrane 22 kDa family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, integral to membrane, peroxisomal membrane;MFPO C.G. S.X.
0.02 2e+0 34 At3g43990 823516 bromo-adjacent homology (BAH) domain-containing protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-7 56 Glycine max GmaAffx.47368.1.S1_at BU965091 - - 2e-7 At5g48840 PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig16075_at Contig16075 - - 4e-1 At5g48840 PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) C.G. S.X.
0.02 6e-2 40 Oryza sativa Os01g0150900 AK058767.1 - Hypothetical protein 9e-1 At1g07060 unknown protein C.G. S.X.
0.22 2e-32 141 Populus trichocarpa PtpAffx.202652.1.S1_at pmrna5299 hypothetical protein - 1e-32 At5g48840 PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) C.G. S.X.
0.05 1e-1 38 Triticum aestivum Ta.27416.1.S1_at BT009390.1 - - 2e-1 At5g48840 PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) C.G. S.X.
0.03 9e+0 30 Vitis vinifera 1620036_at CF405991 hypothetical protein LOC100253221 - 4e+0 At5g60830 AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70) C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.566.1.A1_at AI714636 - - 2e-1 At5g05610 AL1 (ALFIN-LIKE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
X GO:0015940 The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00033 Pantothenate and coenzyme A biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00410 beta-Alanine metabolism
00770 Pantothenate and CoA biosynthesis
01100 Metabolic pathways
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