Gene omics information

Query gene ID At5g48830
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At5g48830834941unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOS.X.H.G.
0.6781.6At3g10160820179DFC (DHFS-FPGS HOMOLOG C)Encodes a protein with tetrahydrofolylpolyglutamate synthase activity that is located in the mitochondrial matrix.S.X.H.G.
0.6378.1At5g35210833475peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family proteinF:protein binding, DNA binding, metalloendopeptidase activity, zinc ion binding;P:proteolysis, regulation of transcription, DNA-dependent;C:nucleus, chloroplast envelope;MPOFBAS.X.H.G.
0.5368.6At3g02450821139cell division protein ftsH, putativeF:in 6 functions;P:unknown;C:integral to membrane, chloroplast;BOMFPAVS.X.H.G.
0.4355.3At2g26930817234ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase.S.X.H.G.
0.4253.9At3g02660821282emb2768 (EMBRYO DEFECTIVE 2768)F:RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBFMPAS.X.H.G.
0.4050.8At2g04360814975unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;BPOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
54.199.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
25.599.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
24.299.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
18.899.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
16.499.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At2g42890818890AML2 (ARABIDOPSIS-MEI2-LIKE 2)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.C.G.S.X.
0.018e-136At5g65570836683pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.018e-136At4g33210829457F-box family protein (FBL15)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBVC.G.S.X.
0.018e-136At1g11730837717galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOC.G.S.X.
0.028e-136At1g71520843492AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.C.G.S.X.
0.028e-136At1g77960844131unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVC.G.S.X.
0.013e+034At5g19210832041DEAD/DEAH box helicase, putativeF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:unknown;BMOFPAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.70426.1.S1_atCA938810--3e-1At5g58590RANBP1 (RAN BINDING PROTEIN 1)C.G.S.X.
0.026e+032Hordeum vulgareContig13060_atContig13060--5e-10At4g10060catalytic/ glucosylceramidaseC.G.S.X.
0.012e+036Oryza sativaOs01g0749000AK107265.1-Protein of unknown function DUF1264 family protein7e-1At1g29680unknown proteinC.G.S.X.
0.113e-1067Populus trichocarpaPtpAffx.202655.1.S1_atpmrna5304hypothetical protein-2e-10At5g48830unknown proteinC.G.S.X.
0.025e-240Triticum aestivumTa.20363.1.S1_atCA679048--3e-10At2g25840OVA4 (ovule abortion 4)C.G.S.X.
0.029e-134Vitis vinifera1616272_atCF371730--4e-2At5g21274CAM6 (CALMODULIN 6)C.G.S.X.
0.025e+032Zea maysZmAffx.160.1.A1_atAI668152--8e-1At4g24380unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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