CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48770

Gene name disease resistance protein (TIR-NBS-LRR class), putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g48770 834935 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA S.X. H.G.
0.25 22.6 At5g48280 834881 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.23 19.3 At1g33710 840262 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.22 17.5 At1g60500 842345 dynamin family protein F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.17 10.2 At5g38400 833827 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OP S.X. H.G.
0.12 4.9 At1g04625 3766658 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.11 4.1 At2g16200 816117 protein binding / structural molecule F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, Golgi-associated vesicle;PO S.X. H.G.
0.11 4.1 At1g79170 844258 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
615.1 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
604.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
533.6 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
532.3 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
501.7 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
473.7 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
430.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
254.9 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
222.8 100.0 E-MEXP-509-raw-cel-829148703
199.1 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 2e-21 105 At1g72840 843615 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.11 9e-15 83 At1g17600 838336 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.12 8e-12 73 At5g40100 834007 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:plasma membrane, chloroplast envelope;PMBOFAV C.G. S.X.
0.07 1e-7 59 At4g09360 826518 disease resistance protein (NBS-LRR class), putative F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFAV C.G. S.X.
0.05 5e-7 57 At1g72860 843617 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.02 1e-4 50 At4g09430 826526 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAV C.G. S.X.
0.01 1e-4 50 At1g72890 843620 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.01 3e-2 42 At4g36140 829771 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOFA C.G. S.X.
0.02 1e-1 40 At5g48780 834936 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 44 Glycine max Gma.8889.1.S1_at BU760580 - - 5e-2 At1g61415 unknown protein C.G. S.X.
0.01 9e-1 36 Hordeum vulgare Contig24244_at Contig24244 - - 3e-1 At1g69960 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) C.G. S.X.
0.01 2e-1 40 Oryza sativa Os08g0194950 9636.m00912 - - 1e+0 At1g21695 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 4e-2 42 Populus trichocarpa PtpAffx.225451.1.S1_x_at pmrna44808 tir-nbs-lrr resistance protein - 5e-2 At1g72890 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.01 3e-2 42 Triticum aestivum TaAffx.78889.1.S1_at CA647676 - - 2e+0 At5g20700 senescence-associated protein-related C.G. S.X.
0.01 1e-4 48 Vitis vinifera 1620558_at AY427121.1 - - 2e-2 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
0.01 8e-1 36 Zea mays Zm.980.1.S1_at AY108395.1 DNA repair protein RAD23 - 2e-7 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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