CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48650

Gene name nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At5g48650 834922 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBA S.X. H.G.
0.44 57.2 At2g41550 818753 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV S.X. H.G.
0.22 17.5 At3g04980 819658 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV S.X. H.G.
0.18 11.4 At5g06350 830523 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.07 1.9 At5g23570 832422 SGS3 (SUPPRESSOR OF GENE SILENCING 3) Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
370.0 100.0 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
184.4 100.0 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
142.0 99.9 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
87.4 99.9 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
77.4 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
71.2 99.9 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
69.9 99.9 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
69.4 99.9 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
61.1 99.8 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
59.2 99.8 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-7 57 At3g07250 819913 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVB C.G. S.X.
0.02 7e-1 36 At4g34500 829601 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 7e-1 36 At3g25150 822106 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MBPFOVA C.G. S.X.
0.01 7e-1 36 At3g54190 824586 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
0.01 7e-1 36 At2g03750 814902 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:endomembrane system;MPOBF C.G. S.X.
0.01 7e-1 36 At1g12430 837799 ARK3 (ARMADILLO REPEAT KINESIN 3) Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations. C.G. S.X.
0.02 7e-1 36 At1g14280 837989 PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. C.G. S.X.
0.01 3e+0 34 At5g43960 834419 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MPFOBVA C.G. S.X.
0.01 3e+0 34 At5g24300 832497 SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1) SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max Gma.11290.1.S1_x_at CD390917 - - 1e-40 At3g53430 60S ribosomal protein L12 (RPL12B) C.G. S.X.
0.02 5e+0 32 Hordeum vulgare rbags14a22_at rbags14a22 - - 3e+0 At2g26180 IQD6 (IQ-domain 6) C.G. S.X.
0.03 6e-6 54 Oryza sativa Os02g0131700 AK103571.1 - Nuclear transport factor 2 domain containingprotein 6e-5 At5g43960 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.42304.1.A1_at BP932825 hypothetical protein - 2e-2 At3g08630 - C.G. S.X.
0.02 5e-2 40 Triticum aestivum TaAffx.57221.1.S1_at CA634368 - - 9e-1 At2g46420 unknown protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1616697_at CA817466 - - 4e+0 At3g09510 nucleic acid binding C.G. S.X.
0.03 5e-3 42 Zea mays Zm.12994.1.S1_at CF627591 - - 7e-4 At5g60980 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006913 The directed movement of molecules between the nucleus and the cytoplasm.
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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