CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48570

Gene name peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g48570 834913 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding;P:protein folding;C:vacuole;BMOFPA S.X. H.G.
0.93 96.4 At3g46230 823768 ATHSP17.4 member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds S.X. H.G.
0.93 96.4 At5g12030 831076 AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A) Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development. S.X. H.G.
0.93 96.4 At1g07400 837252 17.8 kDa class I heat shock protein (HSP17.8-CI) F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAM S.X. H.G.
0.90 95.1 At5g25450 832619 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;MPFO S.X. H.G.
0.88 94.0 At5g12020 831075 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM S.X. H.G.
0.88 94.0 At5g51440 835218 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM S.X. H.G.
0.87 93.5 At5g52640 835341 ATHSP90.1 (HEAT SHOCK PROTEIN 90.1) Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. S.X. H.G.
0.87 93.5 At2g20560 816578 DNAJ heat shock family protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV S.X. H.G.
0.86 93.1 At2g29500 817499 17.6 kDa class I small heat shock protein (HSP17.6B-CI) F:molecular_function unknown;P:response to oxidative stress, response to cyclopentenone, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
206.1 100.0 GSM131453 AtGen_6-9321_Heatstress-Roots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
201.8 100.0 GSM131454 AtGen_6-9322_Heatstress-Roots-3.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
173.5 100.0 GSM131452 AtGen_6-9312_Heatstress-Shoots-3.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
153.9 99.9 GSM131451 AtGen_6-9311_Heatstress-Shoots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
149.0 99.9 GSM131449 AtGen_6-9221_Heatstress-Roots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
148.3 99.9 GSM131450 AtGen_6-9222_Heatstress-Roots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
139.2 99.9 GSM131448 AtGen_6-9212_Heatstress-Shoots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
133.6 99.9 GSM131447 AtGen_6-9211_Heatstress-Shoots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
116.8 99.9 E-MEXP-1725-raw-cel-1669614634
112.1 99.9 E-MEXP-98-raw-cel-320188969
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 4e-83 309 At3g25230 822117 ROF1 (ROTAMASE FKBP 1) Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs. C.G. S.X.
0.02 2e-1 38 At5g53230 835404 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 2e-1 38 At4g20325 5008148 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 2e-1 38 At4g17200 827431 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 9e-1 36 At5g24320 832502 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MBFOPAV C.G. S.X.
0.01 9e-1 36 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 1e-31 139 Glycine max GmaAffx.81432.2.S1_at BF595545 - - 2e-45 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.16 1e-7 57 Hordeum vulgare Contig2718_s_at Contig2718 - - 4e-27 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.19 1e-19 99 Oryza sativa Os08g0525600 CB620654 - Rof1 6e-24 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.23 4e-28 127 Populus trichocarpa PtpAffx.124689.1.S1_at CK111963 hypothetical protein - 4e-32 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.21 3e-10 67 Triticum aestivum Ta.6047.1.S1_at CK155170 - - 3e-10 At5g48570 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative C.G. S.X.
0.43 1e-34 147 Vitis vinifera 1609010_at CB346849 hypothetical protein LOC100266654 - 4e-34 At5g48570 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative C.G. S.X.
0.28 1e-16 87 Zea mays Zm.2379.1.S1_at CK368590 peptidyl-prolyl isomerase - 3e-19 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage