Gene omics information

Query gene ID At5g48560
Gene name basic helix-loop-helix (bHLH) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At5g48560834912basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBVS.X.H.G.
0.5570.6At2g14100815896CYP705A13a member of the cytochrome P450 familyS.X.H.G.
0.5166.3At2g34830818048WRKY35 (WRKY DNA-binding protein 35)member of WRKY Transcription Factor; Group II-eS.X.H.G.
0.5166.3At3g20960821646CYP705A33member of CYP705AS.X.H.G.
0.5065.3At3g46720823825UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFS.X.H.G.
0.4862.5At2g27000817242CYP705A8member of CYP705AS.X.H.G.
0.4050.8At1g69810843317WRKY36member of WRKY Transcription Factor; Group II-bS.X.H.G.
0.3948.4At2g24610816997ATCNGC14member of Cyclic nucleotide gated channel familyS.X.H.G.
0.3846.7At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.S.X.H.G.
0.3643.6At4g13130826927DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast envelope;PMOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
65.399.8GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
58.199.8GSM133749Turner_A-3-Turne-Mut-Base1_SLDGSE5729Role of COV in vascular patterning
57.199.8GSM133753Turner_A-7-Turne-WT-Base1_SLDGSE5729Role of COV in vascular patterning
56.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
52.899.8GSM133750Turner_A-4-Turne-Mut-Base2_SLDGSE5729Role of COV in vascular patterning
52.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
50.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.699.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.599.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
49.299.8GSM184918Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.324e-89329At3g07340819922basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFBC.G.S.X.
0.086e-23109At1g68920843225basic helix-loop-helix (bHLH) family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;PMOBFVAC.G.S.X.
0.152e-1687At1g59640842254ZCW32A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.C.G.S.X.
0.114e-1583At4g34530829604CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1)Encodes a transcription factor CIB1 (cryptochrome-interacting basic-helix-loop-helix). CIB1 interacts with CRY2 (cryptochrome 2) in a blue light-specific manner in yeast and Arabidopsis cells, and it acts together with additional CIB1-related proteins to promote CRY2-dependent floral initiation. CIB1 positively regulates FT expression.C.G.S.X.
0.052e-1377At3g23690821950basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.142e-29131Glycine maxGmaAffx.76438.2.S1_atBE610702--2e-27At3g07340basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.042e-240Hordeum vulgareContig13025_atContig13025--3e-12At1g26260CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)C.G.S.X.
0.084e-1067Oryza sativaOs08g0524800AK099291.1-TA1 protein (Fragment)4e-6At4g34530CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1)C.G.S.X.
0.124e-28127Populus trichocarpaPtpAffx.224240.1.S1_atpmrna42616hypothetical protein-6e-19At3g23690basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.085e-240Triticum aestivumTa.4311.1.S1_atBJ272339--3e-15At4g34530CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1)C.G.S.X.
0.093e-1685Vitis vinifera1612043_atCF210844hypothetical protein LOC100256975-5e-41At5g62610basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.131e-344Zea maysZm.18099.1.A1_atCF631457hypothetical protein LOC100216597-2e-3At5g48560basic helix-loop-helix (bHLH) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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