Gene omics information

Query gene ID At5g48540
Gene name 33 kDa secretory protein-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6982.9At5g4854083491033 kDa secretory protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6982.9At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.6781.6At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAS.X.H.G.
0.6781.6At4g36500829802unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
0.6579.6At5g35735833550auxin-responsive family proteinF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBS.X.H.G.
0.6277.3At4g12720826884NUDT7Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.S.X.H.G.
0.5773.8At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.5673.0At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
0.5673.0At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
0.5570.6At5g13190831158-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
73.599.9GSM131140AtGen_B-26_2-5-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
65.299.8GSM131112AtGen_B-40_3-5-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
59.199.8GSM131111AtGen_B-39_3-4-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
58.999.8GSM131139AtGen_B-25_2-4-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.034e-136At3g07470819935unknown proteinF:unknown;P:biological_process unknown;C:vacuole;POC.G.S.X.
0.012e+034At4g22970828396AESP (ARABIDOPSIS HOMOLOG OF SEPARASE)Putative separase gene, homologous to human and mouse separase protein. It contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms. Also contains a putative EF-hand calcium binding domain. Mutant seeds exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. AESP plays an essential role in embryo development and is required for the removal of cohesin from meiotic chromosomes.C.G.S.X.
0.022e+034At4g14750827130IQD19 (IQ-domain 19)F:calmodulin binding;P:unknown;C:unknown;PMOFBVAC.G.S.X.
0.022e+034At1g23820838993SPDS1 (spermidine synthase 1)Spermidine synthase.C.G.S.X.
0.016e+032At5g39590833955-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFC.G.S.X.
0.026e+032At5g61270836248PIF7 (PHYTOCHROME-INTERACTING FACTOR7)Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light–absorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.C.G.S.X.
0.026e+032At4g11180826720disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGmaAffx.72583.1.S1_atBG157414--7e-2At1g01130unknown proteinC.G.S.X.
0.032e-136Hordeum vulgareHV_CEa0014M04r2_x_atHV_CEa0014M04r2--7e-1At1g29480unknown proteinC.G.S.X.
0.038e-136Oryza sativaOs12g05315569640.m03351--6e-1At1g18680HNH endonuclease domain-containing proteinC.G.S.X.
0.054e-240Populus trichocarpaPtpAffx.202697.1.S1_atpmrna5389--2e-2At5g4854033 kDa secretory protein-relatedC.G.S.X.
0.034e-136Triticum aestivumTaAffx.7033.1.S1_atCA663865--3e-1At5g4854033 kDa secretory protein-relatedC.G.S.X.
0.035e-134Vitis vinifera1613037_x_atCF205253.1--2e+0At2g25950unknown proteinC.G.S.X.
0.033e+032Zea maysZm.16692.1.A1_atCF752089--4e+0At4g04925unknown proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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