CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48530

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At5g48530 834909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.18 11.4 At5g61560 836277 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVA S.X. H.G.
0.10 3.4 At1g61360 842430 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.07 1.9 At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.06 1.4 At5g25930 832662 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
637.8 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
467.1 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
289.3 100.0 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
183.4 100.0 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
172.9 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
139.7 99.9 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
133.1 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
94.6 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
82.5 99.9 E-MEXP-1443-raw-cel-1581869863
77.9 99.9 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 7e-110 397 At3g07440 819932 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e-2 40 At2g17510 816257 EMB2763 (EMBRYO DEFECTIVE 2763) F:ribonuclease activity, RNA binding;P:unknown;C:unknown;BOMFPAV C.G. S.X.
0.02 2e-2 40 At1g70200 843356 RNA recognition motif (RRM)-containing protein F:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVA C.G. S.X.
0.03 7e-2 38 At5g13090 831148 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFOM C.G. S.X.
0.02 3e-1 36 At4g30960 829221 SIP3 (SOS3-INTERACTING PROTEIN 3) Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance. C.G. S.X.
0.03 3e-1 36 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 3e-1 36 At1g06923 3766672 - F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.02 3e-1 36 At1g61740 842471 unknown protein F:unknown;P:unknown;C:endomembrane system, integral to membrane;BOPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-40 167 Glycine max GmaAffx.16746.1.S1_at BU082241 - - 1e-40 At5g48530 unknown protein C.G. S.X.
0.22 1e-20 99 Hordeum vulgare Contig12485_at Contig12485 - - 5e-20 At5g48530 unknown protein C.G. S.X.
0.14 7e-16 85 Oryza sativa Os02g0478500 9630.m02636 - Zn-finger, CCHC type domain containing protein 9e-5 At5g22630 ADT5 (arogenate dehydratase 5) C.G. S.X.
0.32 5e-47 188 Populus trichocarpa Ptp.7466.1.S1_at CV271285 hypothetical protein - 6e-47 At5g48530 unknown protein C.G. S.X.
0.22 9e-14 77 Triticum aestivum Ta.25292.1.S1_at CD373702 - - 2e-13 At5g48530 unknown protein C.G. S.X.
0.31 1e-43 174 Vitis vinifera 1612600_at CF372833 hypothetical protein LOC100243464 /// hypothetical protein LOC100255125 - 6e-43 At5g48530 unknown protein C.G. S.X.
0.14 2e-9 61 Zea mays Zm.16102.1.A1_at CF244374 - - 8e-9 At5g48530 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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