Gene omics information

Query gene ID At5g48450
Gene name sks3 (SKU5 Similar 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.092.8At5g48450834900sks3 (SKU5 Similar 3)Encodes a protein with two DUF26 domains and a signal peptide for secretion. The protein is transported to the apoplast when it is expressed as a GFP fusion protein.S.X.H.G.
0.3338.1At1g66620842980seven in absentia (SINA) protein, putativeF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVAS.X.H.G.
0.103.4At1g69770843313CMT3 (chromomethylase 3)Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.S.X.H.G.
0.082.3At3g57860824955UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE)Plant specific-protein of unknown function, shares 62% homology with UVI4 at aa level.S.X.H.G.
0.071.9At4g05520825902ATEHD2 (EPS15 HOMOLOGY DOMAIN 2)Encodes AtEHD2, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD1, At3g20290).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
45.599.8GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
33.499.7GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.099.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.499.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.999.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.299.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.999.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.999.7E-ATMX-31-raw-cel-1516947899
25.599.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
25.499.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.093e-25117At4g12420826851SKU5Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.C.G.S.X.
0.034e-963At5g66920836826sks17 (SKU5 Similar 17)F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOAC.G.S.X.
0.043e-654At4g25240828627SKS1 (SKU5 SIMILAR 1)Encodes GPI-anchored SKU5-like protein.C.G.S.X.
0.022e-448At3g13390820539sks11 (SKU5 Similar 11)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAC.G.S.X.
0.022e-448At3g13400820540sks13 (SKU5 Similar 13)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAC.G.S.X.
0.023e-344At1g21850838787sks8 (SKU5 Similar 8)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAC.G.S.X.
0.111e-242At5g51480835222SKS2 (SKU5 SIMILAR 2)F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOAC.G.S.X.
0.031e-242At4g38420829999sks9 (SKU5 Similar 9)F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOAC.G.S.X.
0.031e-242At4g22010828290sks4 (SKU5 Similar 4)F:oxidoreductase activity, copper ion binding;P:unknown;C:membrane, plant-type cell wall;FBPMOAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.069e-2099Glycine maxGma.6199.1.S1_atBQ612015--5e-27At5g66920sks17 (SKU5 Similar 17)C.G.S.X.
0.023e-240Hordeum vulgareContig6004_x_atContig6004--1e+0At4g01640-C.G.S.X.
0.111e-450Oryza sativaOs06g0104300AK102494.1-Pectinesterase (EC 3.1.1.11) (Fragment)6e-18At4g25240SKS1 (SKU5 SIMILAR 1)C.G.S.X.
0.302e-33145Populus trichocarpaPtpAffx.15823.1.A1_atCV268506hypothetical protein-7e-34At5g48450sks3 (SKU5 Similar 3)C.G.S.X.
0.023e+034Triticum aestivumTa.26463.1.A1_atCD490944--1e+0At2g12945unknown proteinC.G.S.X.
0.074e-652Vitis vinifera1621115_atCF609165hypothetical protein LOC100262548-1e-13At4g12420SKU5C.G.S.X.
0.056e-1271Zea maysZm.6577.1.A1_atAI714833--3e-13At5g51480SKS2 (SKU5 SIMILAR 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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