CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48430

Gene name aspartic-type endopeptidase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At5g48430 834898 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P S.X. H.G.
0.78 88.6 At3g55150 824681 ATEXO70H1 (exocyst subunit EXO70 family protein H1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.63 78.1 At2g44370 819044 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF S.X. H.G.
0.63 78.1 At3g46280 823773 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO S.X. H.G.
0.63 78.1 At1g51850 841612 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.55 70.6 At2g39200 818505 MLO12 (MILDEW RESISTANCE LOCUS O 12) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.50 65.3 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.48 62.5 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.43 55.3 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity S.X. H.G.
0.40 50.8 At2g36690 818241 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
157.6 99.9 E-MEXP-1094-raw-cel-1379507313
151.1 99.9 E-MEXP-1094-raw-cel-1379507273
118.4 99.9 E-NASC-76-raw-cel-1359878900
106.6 99.9 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
86.5 99.9 E-NASC-76-raw-cel-1359878976
79.3 99.9 E-MEXP-807-raw-cel-1173272832
75.7 99.9 E-NASC-76-raw-cel-1359879158
70.0 99.9 E-MEXP-1094-raw-cel-1379507553
65.1 99.8 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
60.9 99.8 E-MEXP-1094-raw-cel-1379507513
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 40 At3g26085 822206 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:membrane;BOPA C.G. S.X.
0.01 6e-1 36 At3g13340 820534 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPA C.G. S.X.
0.01 6e-1 36 At1g68830 843215 STN7 (Stt7 homolog STN7) STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation C.G. S.X.
0.01 2e+0 34 At5g21150 832241 PAZ domain-containing protein / piwi domain-containing protein F:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.01 2e+0 34 At5g09630 830822 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.02 2e+0 34 At5g43440 834364 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase C.G. S.X.
0.01 2e+0 34 At3g62630 825437 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA C.G. S.X.
0.02 2e+0 34 At3g29050 822549 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max HgAffx.23353.1.S1_at CB825727 - - 3e-1 At5g36970 NHL25 (NDR1/HIN1-LIKE 25) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HU07H02r_at HU07H02r - - 6e-1 At3g62350 - C.G. S.X.
0.02 1e+0 36 Oryza sativa Os.52456.3.S1_x_at - - - 0 C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.212519.1.S1_at pmrna24517 hypothetical protein - 6e-5 At5g24630 BIN4 (brassinosteroid-insensitive4) C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.92581.1.S1_at BJ258220 - - 7e-2 At5g48430 aspartic-type endopeptidase C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1612747_at BQ800570 similar to ceramide glucosyltransferase - 1e+0 At2g19880 ceramide glucosyltransferase, putative C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.73.1.S1_at AI665183 Hypothetical protein LOC100191932 - 1e-5 At1g11930 alanine racemase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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