CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48410

Gene name ATGLR1.3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At5g48410 834896 ATGLR1.3 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.55 70.6 At5g48400 834895 ATGLR1.2 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.25 22.6 At1g69790 843315 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
0.25 22.6 At4g26120 828718 ankyrin repeat family protein / BTB/POZ domain-containing protein F:protein binding;P:response to chitin;C:cellular_component unknown;OMPBFV S.X. H.G.
0.13 5.8 At1g63720 842676 - F:unknown;P:unknown;C:unknown;MPFOVB S.X. H.G.
0.09 2.8 At1g61420 842436 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.07 1.9 At5g53110 835391 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.04 0.9 At3g14470 820670 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
101.5 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
58.1 99.8 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
54.6 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.3 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.7 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
46.0 99.8 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
45.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.8 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.5 99.8 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
39.8 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 1255 At5g48400 834895 ATGLR1.2 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.17 3e-23 111 At3g07520 819940 GLR1.4 (GLUTAMATE RECEPTOR 1.4) member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. C.G. S.X.
0.01 2e-2 42 At4g12770 826889 heat shock protein binding F:heat shock protein binding;P:biological_process unknown;C:cytosol, plasma membrane;MOBFPVA C.G. S.X.
0.01 8e-2 40 At5g11180 830988 ATGLR2.6 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 3e-1 38 At1g15660 838135 CENP-C (CENTROMERE PROTEIN C) Encodes a homologue of the human centromeric protein C (CENP-C). CENP-C co-localizes with the 180 bp centromeric regions of chromosomes throughout the cell cycle, but does not completely cover the 180 bp regions. C.G. S.X.
0.01 1e+0 36 At5g17530 831619 phosphoglucosamine mutase family protein F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMFP C.G. S.X.
0.01 1e+0 36 At4g30670 829190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 40 Glycine max PsAffx.C53000011_at PsAffx.C53000011 - - 7e+0 At4g00030 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.01 6e-1 36 Hordeum vulgare rbah36k01_s_at rbah36k01 - - 1e+0 At3g04430 anac049 (Arabidopsis NAC domain containing protein 49) C.G. S.X.
0.02 2e-1 40 Oryza sativa Os09g0428600 9637.m02252 - - 3e-2 At3g24506 unknown protein C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.31172.1.A1_at CV244480 hypothetical protein - 1e-3 At1g06010 unknown protein C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.84221.1.S1_at CA683199 - - 1e+0 At2g39000 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1608172_at CD799315 - - 1e-2 At2g18050 HIS1-3 (HISTONE H1-3) C.G. S.X.
0.01 1e-1 38 Zea mays Zm.12175.1.A1_at AY107356.1 hypothetical protein LOC100280086 - 1e-8 At3g05760 nucleic acid binding / zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0006874 Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.
N GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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