CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48400

Gene name ATGLR1.2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At5g48400 834895 ATGLR1.2 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.32 35.7 At4g21120 827860 AAT1 (AMINO ACID TRANSPORTER 1) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. S.X. H.G.
0.25 22.6 At5g46350 834678 WRKY8 member of WRKY Transcription Factor; Group II-c S.X. H.G.
0.23 19.3 At4g23280 828427 protein kinase, putative F:kinase activity;P:defense response;C:chloroplast;MPOBFVA S.X. H.G.
0.20 14.4 At1g51890 841616 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.15 7.8 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA S.X. H.G.
0.11 4.1 At5g67340 836869 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFB S.X. H.G.
0.10 3.4 At4g11170 826718 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:response to ozone, defense response;C:mitochondrion;PMBOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
246.2 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
180.8 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
131.1 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
105.4 99.9 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
91.6 99.9 E-MEXP-807-raw-cel-1173272948
81.8 99.9 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
81.8 99.9 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
65.2 99.8 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
63.6 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
63.4 99.8 GSM142845 MG001_ATH1_A26-Torres-8N3 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 1285 At5g48410 834896 ATGLR1.3 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.20 2e-23 111 At3g07520 819940 GLR1.4 (GLUTAMATE RECEPTOR 1.4) member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. C.G. S.X.
0.12 5e-9 63 At3g04110 819566 GLR1.1 (GLUTAMATE RECEPTOR 1.1) putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. C.G. S.X.
0.03 2e-2 42 At5g27100 832768 ATGLR2.1 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 7e-2 40 At5g11180 830988 ATGLR2.6 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.02 3e-1 38 At4g17340 827446 TIP2 F:water channel activity;P:transport, response to salt stress;C:plasma membrane, chloroplast, vacuole, membrane;BPMOFAV C.G. S.X.
0.01 1e+0 36 At5g48375 834891 TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3) Is a myrosinase pseudogene that codes for a truncated and frameshifted protein. Although TGG3 apparently is a pseudogene, its mRNA is expressed specifically in stamen and petal according to RT-PCR analysis. Western analysis shows no band of the size expected for a TGG3 protein. C.G. S.X.
0.01 1e+0 36 At4g31710 829299 ATGLR2.4 member of Putative ligand-gated ion channel subunit family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 38 Glycine max GmaAffx.38430.1.S1_at CA936241 - - 6e-2 At5g18420 unknown protein C.G. S.X.
0.01 1e-1 38 Hordeum vulgare HVSMEi0003A10r2_s_at HVSMEi0003A10r2 - - 4e-2 At4g14750 IQD19 (IQ-domain 19) C.G. S.X.
0.01 6e-1 38 Oryza sativa OsAffx.30027.1.S1_at - - - 0 C.G. S.X.
0.04 3e-2 42 Populus trichocarpa PtpAffx.214267.1.S1_at pmrna27767 glutamate-gated kainate-type ion channel receptor subunit GluR5 - 5e-3 At5g11180 ATGLR2.6 C.G. S.X.
0.02 3e-1 38 Triticum aestivum Ta.30759.2.A1_a_at CA608414 - - 4e+0 At4g32360 NADP adrenodoxin-like ferredoxin reductase C.G. S.X.
0.01 8e-2 38 Vitis vinifera 1617668_at CF514659 hypothetical protein LOC100243346 - 5e-4 At4g11080 high mobility group (HMG1/2) family protein C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.617.1.A1_at AI715045 - - 2e-1 At5g09600 SDH3-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0006874 Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.
N GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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