Gene omics information

Query gene ID At5g48390
Gene name ATZIP4
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g48390834894ATZIP4Defective in meiotic chromosome segregationS.X.H.G.
0.5974.7At4g18090827534unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPS.X.H.G.
0.5873.8At2g37910818367cation/hydrogen exchanger, putative (CHX21)F:monovalent cation:proton antiporter activity;P:cation transport;C:endomembrane system;PS.X.H.G.
0.5570.6At5g60320836154lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.5570.6At4g11590826764F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5267.4At1g43680840955-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5065.3At3g24850822083DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PS.X.H.G.
0.4862.5At2g32310817792-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.4761.2At2g23100816842DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVAS.X.H.G.
0.4457.2At1g55790842028ATP binding / nucleotide binding / phenylalanine-tRNA ligaseF:phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:cytoplasm;PFMOBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
261.6100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
243.9100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
237.1100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
234.3100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
230.7100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
220.7100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
219.6100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
218.4100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
202.6100.0GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
201.2100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e+036At5g14700831322cinnamoyl-CoA reductase-relatedF:binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;POBFMVAC.G.S.X.
0.011e+036At5g24470832518APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.C.G.S.X.
0.011e+036At5g26660832723ATMYB86 (MYB DOMAIN PROTEIN 86)a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters.C.G.S.X.
0.011e+036At4g2941082906260S ribosomal protein L28 (RPL28C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFOC.G.S.X.
0.011e+036At3g47930823948ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesisC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxGma.8679.2.S1_atBM886093--7e-5At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.014e-240Hordeum vulgareContig24321_atContig24321--3e-1At5g19000ATBPM1 (BTB-POZ and MATH domain 1)C.G.S.X.
0.012e-140Oryza sativaOs.55057.1.S1_at---0C.G.S.X.
0.188e-43176Populus trichocarpaPtpAffx.211966.1.S1_atpmrna23491hypothetical protein-6e-43At5g48390ATZIP4C.G.S.X.
0.012e+036Triticum aestivumTaAffx.59615.1.S1_atCA598014--8e-1At5g06710HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)C.G.S.X.
0.011e-138Vitis vinifera1611990_atCF415757hypothetical LOC100260122-4e+0At5g66250kinectin-relatedC.G.S.X.
0.016e-136Zea maysZm.14845.1.S1_atAY106843.1hypothetical protein LOC100277283-2e+0At4g34020DJ-1 family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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