CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48290

Gene name heavy-metal-associated domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF S.X. H.G.
0.60 75.7 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB S.X. H.G.
0.57 73.8 At1g47480 841155 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAV S.X. H.G.
0.55 70.6 At1g72200 843552 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB S.X. H.G.
0.53 68.6 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. S.X. H.G.
0.40 50.8 At1g50560 841477 CYP705A25 member of CYP705A S.X. H.G.
0.38 46.7 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. S.X. H.G.
0.33 38.1 At2g44790 819088 UCC2 (UCLACYANIN 2) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
0.32 35.7 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
139.7 99.9 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
108.0 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
72.6 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
67.7 99.9 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
60.0 99.8 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
57.6 99.8 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
54.2 99.8 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
47.0 99.8 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
46.4 99.8 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
45.9 99.8 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 1e-34 147 At3g07600 819951 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFV C.G. S.X.
0.03 3e-1 36 At2g28660 817415 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF C.G. S.X.
0.01 3e-1 36 At2g28180 817364 ATCHX8 member of Putative Na+/H+ antiporter family C.G. S.X.
0.02 1e+0 34 At5g50770 835149 AtHSD6 (hydroxysteroid dehydrogenase 6) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV C.G. S.X.
0.01 1e+0 34 At4g13350 826966 NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE) Encodes a GTPase that interacts with nuclear shuttle proteins (NSPs) from a number of different plant viruses. The gene is widely expressed and NIG transcript levels do not rise in response to viral infection. This cytoplasmic protein does not directly interact with a viral movement protein (MP), but, it does promote the movement of NSP from the nucleus to the cytoplasm. Overexpression of NIG in Arabidopsis plants renders them more sensitive to geminivirus infection. C.G. S.X.
0.03 1e+0 34 At4g39320 830087 microtubule-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max GmaAffx.82549.1.S1_at BU763720 - - 2e-5 At3g17970 atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III) C.G. S.X.
0.03 5e-1 34 Hordeum vulgare Contig1763_s_at Contig1763 - - 9e-1 At5g48290 heavy-metal-associated domain-containing protein C.G. S.X.
0.04 8e+0 32 Oryza sativa Os03g0418500 NM_190654.1 - Hypothetical protein 2e+0 At5g48290 heavy-metal-associated domain-containing protein C.G. S.X.
0.05 4e-1 36 Populus trichocarpa PtpAffx.135056.1.S1_at AJ769211 - - 2e-4 At4g39700 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.03 4e+0 32 Triticum aestivum TaAffx.83084.2.S1_at CA662276 - - 1e+0 At3g22820 allergen-related C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1612306_at CF208014 - - 3e+0 Atmg01020 - C.G. S.X.
0.04 7e+0 30 Zea mays ZmAffx.589.1.A1_at AI715017 - - 8e-1 At5g53880 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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