CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48070

Gene name XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g48070 834859 XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. S.X. H.G.
0.33 38.1 At4g13235 826940 EDA21 (embryo sac development arrest 21) Encodes a defensin-like (DEFL) family protein. S.X. H.G.
0.33 38.1 At4g36430 829795 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM S.X. H.G.
0.22 17.5 At3g13650 820569 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P S.X. H.G.
0.13 5.8 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
174.7 100.0 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
140.1 99.9 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
118.4 99.9 GSM133719 Deeken_A-1-Deeke-Tum_SLD_REP1 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
114.7 99.9 GSM133141 S1500_8H_A GSE5688 AtGenExpress: Response to sulfate limitation
84.0 99.9 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
81.2 99.9 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
78.3 99.9 GSM133129 S0_8H_A GSE5688 AtGenExpress: Response to sulfate limitation
78.2 99.9 GSM133142 S1500_8H_B GSE5688 AtGenExpress: Response to sulfate limitation
73.6 99.9 GSM133140 S1500_4H_B GSE5688 AtGenExpress: Response to sulfate limitation
73.1 99.9 E-MEXP-635-raw-cel-912819840
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 743 At4g30280 829151 XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18) putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. C.G. S.X.
0.81 0 722 At1g65310 842839 XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17) putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. C.G. S.X.
0.82 1e-173 609 At4g30290 829152 XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19) putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. C.G. S.X.
0.23 2e-21 103 At4g30270 829150 MERI5B (meristem-5) encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response. C.G. S.X.
0.32 3e-17 89 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli C.G. S.X.
0.12 2e-15 83 At4g25810 828686 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) xyloglucan endotransglycosylase-related protein (XTR6) C.G. S.X.
0.06 3e-8 59 At5g65730 836702 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
0.12 4e-7 56 At3g23730 821955 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
0.12 7e-6 52 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 7e-16 85 Glycine max Gma.4027.1.S1_at BQ629007 - - 3e-12 At4g30270 MERI5B (meristem-5) C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig19813_at Contig19813 - - 5e+0 At3g43083 LCR33 (Low-molecular-weight cysteine-rich 33) C.G. S.X.
0.02 8e-1 36 Oryza sativa Os03g0293400 AK058372.1 - Aprataxin (Forkhead-associated domainhistidine-triad like protein) (FHA-HIT). Splice isoform 6 1e-8 At5g01310 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.29 1e-11 71 Populus trichocarpa PtpAffx.214394.1.S1_at pmrna28006 hypothetical protein - 8e-18 At4g30270 MERI5B (meristem-5) C.G. S.X.
0.04 3e-2 40 Triticum aestivum TaAffx.15847.2.S1_at CA721853 - - 1e-3 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) C.G. S.X.
0.18 2e-6 52 Vitis vinifera 1609790_at CF207994 hypothetical protein LOC100252173 - 1e-10 At3g23730 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1359.1.S1_at 40794996-47 - - 1e+1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
L GO:0006073 The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage