CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g48000

Gene name CYP708A2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
0.86 93.1 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.75 86.9 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB S.X. H.G.
0.50 65.3 At5g42590 834266 CYP71A16 putative cytochrome P450 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.4 99.8 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
57.5 99.8 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
50.9 99.8 GSM131574 ATGE_99_B GSE5631 AtGenExpress: Developmental series (roots)
50.7 99.8 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
49.9 99.8 E-MEXP-722-raw-cel-1062243516
49.1 99.8 GSM131573 ATGE_99_A GSE5631 AtGenExpress: Developmental series (roots)
48.8 99.8 GSM291024 root - 08% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
47.5 99.8 E-MEXP-722-raw-cel-1062243183
46.5 99.8 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
43.1 99.8 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 2e-47 190 At3g44970 823632 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV C.G. S.X.
0.36 4e-27 123 At1g78490 844185 CYP708A3 member of CYP708A C.G. S.X.
0.08 3e-25 117 At5g52080 835284 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.08 6e-23 109 At2g27540 817301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.24451.1.A1_at BU550405 - - 3e-1 At4g36380 ROT3 (ROTUNDIFOLIA 3) C.G. S.X.
0.02 6e+0 32 Hordeum vulgare S0000700005B03F2_at S0000700005B03F2 - - 2e-1 At4g39220 ATRER1A C.G. S.X.
0.01 1e-1 40 Oryza sativa Os04g0570000 AJ459255.1 - E-class P450, group I family protein 2e-2 At1g12740 CYP87A2 C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.13757.1.A1_at CK093352 hypothetical protein - 1e-9 At2g40550 ETG1 (E2F TARGET GENE 1) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.83851.1.S1_at CA649572 - - 5e-1 At3g13227 serine-rich protein-related C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1619034_at CK136955.1 hypothetical protein LOC100264301 - 1e-3 At4g15393 CYP702A5 C.G. S.X.
0.02 1e+0 34 Zea mays Zm.9599.1.A1_at BM333574 - - 2e-1 At1g27330 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0080003 The chemical reactions and pathways involving the triterpene thalianol.
X GO:0048364 The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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